Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01496 ATGGCTTCATCGTCTAGCAGTGGATTGACGTTCAAGCTGCACCCACTTGTTATAGTTAATATATCAGATCACTTCACAAGGGTCAAGTCTCAGACACACCCACCCTCCACCACCATTTCTGTGCCCCACTCTTCCACTCTCAGCAACGGAGCTGATGCATCGGTTGTAGCATCTTCTTCACTTACCTCACCCGCACTACGGGTTTATGGGTGTGTTATTGGAATTCAGAGGGGCCGCACTGTTGAGATCTTCAATAGCTTTGAGCTTCTCTTTGATGCTTCTACTCACTCCCTTGACCGTGCCTTCCTTGAAAAGAAGCAAGAGCTTTATAAGAAAGTTTTCCCTAATTTCTATGTTCTTGGTTGGTATTCCACGGGGAGTGATGCACAAGAGTCTGACATGTATATCCATAAAGCTCTAATGGACATAAATGAAAGCCCTGTTTATGTTCTTCTTAACCCTTCAATAAATCATGCGCAAAAGGATCTACCAGTAACCATTTATGAGAGTGAGCTTCACATTATAGACGGGATACCACAAGTGATTTTTGTTCGATCAAGTTACACAATAGAGACTGTAGAAGCTGAGAGGATCTCCGTAGATCATGTTGCACATCTTAAACCATCCGATGGGGGTTCTGCTGCTACTCAATTGGCTGCACACCTCACTGGTATTTATAGCGCCATGAAAATGTTGAATAGCAGAATAAGGGTACTTCATCAATATCTTCTTGCAATGCAGAATGGCGATATTCCTTGGGAGAATTCACTACTCAGACAAGTATCAAGTCTTCTTAGAAGATTACCGGTCATTGAATCAGGGAAATTTCAGGATGATTTCTTAATGGAGTGCAGCGACACACTGTTGATTGCATATCTGGCAATGATCACCAACTGCTCCAGGTCTGGTTCTATTTCCATGGGAATGGGTCTAGCTTCCTCCCGAATCTCCCCAGAGGGTTCAGTTAGAAGCCATGGTGGCATTTATGGCTCGGAATACCGATCCTTCAATCGTTCTAACAGTTTTGCTCGCGGCCAAGGCTACGCCAAACCATTTCACTCACCACCGCCCCCCCTGCACCCATCAGGTAGAAGTGGATTTGTTGATGATATCTTCATGGAAGCCGGTCGGCTTGCAGCAGAATACTTGGTTTCTAAGGGGTTGCTTCCTTCTAGCACACTTTCTTCGGAATGGGAAAATGGCAGCTTGAAGGAGCATGGTGAATATCATGAATCAAGGTTGTTGGAGGGTGAGAATATACAATATTCATCTGAAGGCCGACCTTCTGCCCTAGCTTCCCGTTTAGGAAATGCAGGGTCTGATCCTGGGTCAACTCGAAGAAGGTCGTCTGATGAGTTCAGCCCACTGGATTTGAGAAATCAAGTAAAAGGAAAAAGAAAAGCAGCTCCTTTTCGAGCTTATGAATCTAACCGGAGTGATCGAGAATATGGTCGAAGCGTGTCATTACCTGATAGAGCTAGAGTTACACTCGATATGGAGCCTAATGTCGGTGCTCGAACAATTTCTGGATATAAAAATCAGTTTGAAGTTGGTGATGACATTGGTGAAGGGCTGCAAAAATCAATCTCCACTGAATTACCTGTAGAAAGCGAGAATAAATTAGAATCTGAACTGACGAAGAAGAAAACTTGTTCTGATGATGCAGTAAAGCTCCCACAAGAGAATGACGACCAATTTAACAAGGTTTCCGATAGCTCGAAGATTTTAACTTCTGGGATGGAGGATGTGAAAGATAGCAGCTCTAGCAGTGAGGTAACTGGTGGACAGTCTGTAGTCGAGAGTCAATCTGACCCAAATGATGCTTTGATTTCTGATCCTCCAGCCAAGCCGCCAAATGTTCTACTTGCATTGTGTGGATTTGGTAAGGTCCCCACAAAAATTCGATCTGCACTGTCATACAAGGGATCCAAGATAGGGCGTGATGTTATATCGGGGCAGAAAAAACCTATCGAGAATAGCACTCAAAGAGACCCTGAAGTATTAGTTGACAGTAAGTTTTCTGAAGGTTCCATATACGATGCTCTGTCGAAAGAAACAAATAACTTAAAGCAGTTGAACTCTGAAGTTACTATCCCAGTGACCCCCCAGGGTACCGATGTCATCGATGAATTATATCCCACATATATTTTTAAGCCTGTTGAAAGTGGGAATTCTCAAACATTAGTTAATAGAGACTGTTTGGGTGAAAATGAGCCACAACCAGGTGATGGAACTTCAGTATTTGGTGGAAATAGTTTCGCGTATAAATATGGAGGTCAGAAAGAAGCTCCAGAAGTGATTGATATTATGGAAGAAACCGAAAAGCCCAGAGAAATTCTTTCTCCCATGGCTGCAAAGGAGGACAGTACGTTCCACCTTCCGGATTTCAGTGAAAGAAAATTTAATTCAGATGAAGGCGAGACACCTGATGAGGAACATATTAGGGAAGTTAATTGTGCGAGCTCATTGGATTTTGGGTTTCCTAAAGATGGAGTTGAACCATGTGGTGTGTATGGACAAGAAAAGCAGCTTTTTCCAACTTCCTTTAAAATCTGTGACCTAAACCTCATGGAAGCTACTGACATGCATGAAAATCATGGCAATGATCCCATTATGTTTTTCCCTTCTGTATCTCAATCGAAAAGAGAAAAATCACCTTTTGGTATGGACTTGTCCATGACCAGTTCTAACGAACATGGTGGTGGTAACAAGCACATTAGTAAAGAGATCGAAATTATCAATTTAGAAGACGATTTGGTCGATGAAGACAAGCCATTCAATAATGCAGATAGAAAGACAGAGACTCTATATACCAGTCTGGACGCATTCCCTGACCATGCACAGAATACGAGCGGTGTTCCTGACATTCAAGATGGTTATGGACTAATCTCAGAGTTGCTTGGAGCTGATTTCCCTAACTGTTCTTCAGTTTCTGGGGATATCAATTTGATAGATAATGAAATGGTCCTTCATAATGAGCAGGGAACGCTTGATGACGATTCGATATACATGTCCTTGGGAGAAATACCATTGAGTAAGCTTGATTATTTACTTAATATTATGCTCTTATTTGAGGGGCTGGGAACAGCAGCCAACGCAGGAATACGAGAAGCCATTTTGATCAATCCTTCGTACTAG 3138 42.64 MASSSSSGLTFKLHPLVIVNISDHFTRVKSQTHPPSTTISVPHSSTLSNGADASVVASSSLTSPALRVYGCVIGIQRGRTVEIFNSFELLFDASTHSLDRAFLEKKQELYKKVFPNFYVLGWYSTGSDAQESDMYIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHIIDGIPQVIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIYSAMKMLNSRIRVLHQYLLAMQNGDIPWENSLLRQVSSLLRRLPVIESGKFQDDFLMECSDTLLIAYLAMITNCSRSGSISMGMGLASSRISPEGSVRSHGGIYGSEYRSFNRSNSFARGQGYAKPFHSPPPPLHPSGRSGFVDDIFMEAGRLAAEYLVSKGLLPSSTLSSEWENGSLKEHGEYHESRLLEGENIQYSSEGRPSALASRLGNAGSDPGSTRRRSSDEFSPLDLRNQVKGKRKAAPFRAYESNRSDREYGRSVSLPDRARVTLDMEPNVGARTISGYKNQFEVGDDIGEGLQKSISTELPVESENKLESELTKKKTCSDDAVKLPQENDDQFNKVSDSSKILTSGMEDVKDSSSSSEVTGGQSVVESQSDPNDALISDPPAKPPNVLLALCGFGKVPTKIRSALSYKGSKIGRDVISGQKKPIENSTQRDPEVLVDSKFSEGSIYDALSKETNNLKQLNSEVTIPVTPQGTDVIDELYPTYIFKPVESGNSQTLVNRDCLGENEPQPGDGTSVFGGNSFAYKYGGQKEAPEVIDIMEETEKPREILSPMAAKEDSTFHLPDFSERKFNSDEGETPDEEHIREVNCASSLDFGFPKDGVEPCGVYGQEKQLFPTSFKICDLNLMEATDMHENHGNDPIMFFPSVSQSKREKSPFGMDLSMTSSNEHGGGNKHISKEIEIINLEDDLVDEDKPFNNADRKTETLYTSLDAFPDHAQNTSGVPDIQDGYGLISELLGADFPNCSSVSGDINLIDNEMVLHNEQGTLDDDSIYMSLGEIPLSKLDYLLNIMLLFEGLGTAANAGIREAILINPSY 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41793970 41802658 - BLOR12677 Blo03g01496 58960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01496 1045 Pfam Maintenance of mitochondrial structure and function 194 299 IPR024969 -
Blo03g01496 1045 Gene3D Cytidine Deaminase, domain 2 1 208 - -
Blo03g01496 1045 MobiDBLite consensus disorder prediction 346 365 - -
Blo03g01496 1045 MobiDBLite consensus disorder prediction 423 487 - -
Blo03g01496 1045 MobiDBLite consensus disorder prediction 563 608 - -
Blo03g01496 1045 PANTHER PROTEIN, PUTATIVE-RELATED 304 1014 IPR040276 -
Blo03g01496 1045 PANTHER PROTEIN, PUTATIVE-RELATED 304 1014 - -
Blo03g01496 1045 CDD MPN_CSN6 9 301 IPR033859 GO:0000338|GO:0008180
Blo03g01496 1045 MobiDBLite consensus disorder prediction 557 612 - -
Blo03g01496 1045 MobiDBLite consensus disorder prediction 445 487 - -
Blo03g01496 1045 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 146 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo03g01496 1045 ProSiteProfiles MPN domain profile. 45 174 IPR037518 -
Blo03g01496 1045 SMART pad1_6 10 173 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01496 K12179 COPS6, CSN6; COP9 signalosome complex subunit 6 - csv:101217113 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01496 Blo-Chr3:41793970 Blo10g00894 Blo-Chr10:27923079 2.27E-115 dispersed
Blo03g01496 Blo-Chr3:41793970 Blo07g01148 Blo-Chr7:31327882 3.65E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g791 . Blo03g01496 . Bda09g00454 . Bpe08g01072 . . . . Cma01g01040 Cma09g01046 Car01g00914 Car09g00953 Sed07g2784 Cpe06g00853 Cpe02g00852 Bhi09g01848 Tan01g3262 Cmetu01g0448 . . Mch11g1337 . . . . . . . . . . . . Lsi02g01782 Csa07g01040 . . . . . . . . Bma07g01231 . . Cmo01g01079 Cmo09g01052 . . . . . . . . . . . . . Cla09g02118 Cam09g2205 Cec09g2278 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006191 2 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01496 Blo_Chr03 FPKM 4.947544 5.290267 6.226166 6.543904 12.902004 14.879348 12.80363 13.620562 12.576303 11.174146