Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01527 ATGTGGGGTTTATCCTGCGCCTTTCCTTCTTACTCGACGTCTTCAGTTATAAGTTCCAGACCCGTTGCTACTCTTCGCACGGACTCTCGAGTTTCACACGCCATTAATGGCGGCAATCATTTGAGTGACACCACATTTGTTCCAGAGGTTGTACAAGCAGTTAAATCCTTGCAGGCAGAATTCCGAGCAGTGGATAATTTGGTGGCATGTAATACAGCTCGAGTTCTTCGAGCATTTCAGAAGGCACGAATTATTGTTGAAATTTTGAAACCGTTAATAGAGGTAATTTTTCATAACCAGCACTTTAGTGGATCGACTGGCTATGGCCATGATGAGGCAGGGTTCCGTGAAGCATCAGACAACGCCTTTGCAGAGATTGATGGAGCTGAATCCACAATAGTTAGGTCACAGTTTTTCTCAGGTACTCATGCCATCACTTGTGCCCTATTCGCCTTTTTTTGTACCGGGGATGAGCCTTTGGCGGTGGCTGGTGCTCCATATGACACCTTAGAAAAAGTGATCGGGAAAAGAGATTCGAACGGGCTTGGCTTGTTGAAAGATTTTGGAGATGGTGGACTTAACTGGGAAGCACTTAAAAATGCTGTGAAATCGGAGACCAAATGTGCTCTCATACAGAGGTCTTGTGGATATTCATGGAGGGGAAGTTTAAGTGTAGACGAAATAGGAAGGGCAATAAAGCTTATAAAGGTTCAGAATCCAGACTGTAAGGTGATGGTGGATACTTGCTATGGTGAATTTGTGGAAAGTATTGAACCTCCAATGGTGGGTGCAGATCTAATTGCTGGCAGTTTGATCAAAAACCCTGGTGGAACAATTGCTCCTTGCGGTGGATATGTAGCCGAAGGAGACAGATGGGTTAGGGCGGCTGCAGCCCGCTTGTCTACCCCTGGTTTAGGTGTAGATTGTGGCTCAACTTCGGGTGATGTAATGCGGTCGATATTCCAAGGGTTGTTTCTTTCGCCTCAAATGGTTGGAGGGGCATTAAAGAGCTCGGAAGCAGACAGAGCTTGCTCGCTTTCTGTGAGGCCGTCCAAAGAAGTTCTCCCGTGGGTTCGTTCACTAAACCAGTTGCCGGAAATACTTCTGGGTGGAACTCACTGGACTCAGTGGGGGCTGGTCTGGGAGAGAGCCACTACGATCGACATGGGGGATTTTTACTCTGAGATGGATGAAGCCCACTGGTGGCAAATGGAGGACGACTTGAAGGAGCTAAAGCACAAGAGGCAAGCAGAGCTTATTGCTCCTGATTTCACATCCGCCACAACGGATGTTGAAGAAATGGAGGTTGCTGCTCCAACTTTCCCTGCCACGGAACCTGCCGAGGAAGAAATGGAGGTTGCTGCTCCAACTTTCCTAGCAGCGAACATAGCTGAGGAAGAACTGGTGGTTACCCGTGTGCATGCTCGACAGGAGAACACCCACGCCGAGAATGCTTCCAAACTGGATGTTATTCTGGCCGAGCTAAACCAGACCTTGGCGGATCGGACCAATGCGAAACAGAAACAGGTCCTCGTGAAGCCTGGACCATCGTCTTCTTCACCGCCAGTATTCGTCAACCCTAAACTAGCTGAATGTGGGCACTCGGATTTCCAGCACTGGCATTGGCTGCTACAGATACCAGGCATATGTATCTTTGATTCGGGTGGAGGCATATGGGAGCATCAATAG 1689 48.37 MWGLSCAFPSYSTSSVISSRPVATLRTDSRVSHAINGGNHLSDTTFVPEVVQAVKSLQAEFRAVDNLVACNTARVLRAFQKARIIVEILKPLIEVIFHNQHFSGSTGYGHDEAGFREASDNAFAEIDGAESTIVRSQFFSGTHAITCALFAFFCTGDEPLAVAGAPYDTLEKVIGKRDSNGLGLLKDFGDGGLNWEALKNAVKSETKCALIQRSCGYSWRGSLSVDEIGRAIKLIKVQNPDCKVMVDTCYGEFVESIEPPMVGADLIAGSLIKNPGGTIAPCGGYVAEGDRWVRAAAARLSTPGLGVDCGSTSGDVMRSIFQGLFLSPQMVGGALKSSEADRACSLSVRPSKEVLPWVRSLNQLPEILLGGTHWTQWGLVWERATTIDMGDFYSEMDEAHWWQMEDDLKELKHKRQAELIAPDFTSATTDVEEMEVAAPTFPATEPAEEEMEVAAPTFLAANIAEEELVVTRVHARQENTHAENASKLDVILAELNQTLADRTNAKQKQVLVKPGPSSSSPPVFVNPKLAECGHSDFQHWHWLLQIPGICIFDSGGGIWEHQ 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42206286 42211832 - BLOR12708 Blo03g01527 58991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01527 562 Pfam Methionine gamma-lyase 51 338 IPR009651 -
Blo03g01527 562 PANTHER - 1 338 IPR009651 -
Blo03g01527 562 SUPERFAMILY PLP-dependent transferases 72 331 IPR015424 -
Blo03g01527 562 Gene3D - 106 311 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01527 - - - jre:109013793 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01523 Blo-Chr3:42157754 Blo03g01527 Blo-Chr3:42206286 3.36E-99 dispersed
Blo03g01527 Blo-Chr3:42206286 Blo16g00728 Blo-Chr16:28306108 2.16E-16 dispersed
Blo03g01527 Blo-Chr3:42206286 Blo03g01529 Blo-Chr3:42231663 7.76E-19 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g283 . Blo03g01527 . Bda09g00485 . Bpe08g01043 . . . . . . . . Sed04g3149 . . Bhi09g01999 Tan01g4449 Cmetu04g1129 . . . . . . . . . . . . Cone9ag0140 . . . . . . . . . . . . Bma07g01199 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34