Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01537 ATGAGCAAGACCGGAGACGAAGATGGAGATGACGATTGCTTTTACGAGTCTCTTGATCGCTTAGTCTCTTGCTCCACTTCTAATTCCGACTCCGACAACGATTCTCACTCCTGTTCGCCGAATTATGGTTCGGAGCACGTTGTTTCAGTCCCCAAGTTTCCGGTGGGTGTGTCTAATTACGATCTTTGGGCTGCGGAGCCTTCTTCCGTTTCCGACCGGCGGAATCGCCTTCTGCATGAAATGGGTCTCAACAAGGATCCCTCTTTGTCGCGGGTCAAATTTATATCTGAAGATAAAGAAAAGGATTCGGCGGAGTTCTCTCGTTTGGTATCATCAGATCACTTGAACCATCAAGCGCAACATAACGCTATCATCTTATCAAAATCGTCGCCGGATCGTATTGTCAGCAAACATAATCCTTCGTGTCATTCTCATAACGACGATAATAAGAGTACCTTTTTTTCTTCTTCAGTTTGTTCTCCTTCGATTCTTTCTGCTCATTTAATTGATGACAGTAGTTCGTGTGTAAATAGTCGTAAACATTTAATTTTCAAATCACAAAGTGGAAAGGGTGAGGGAGCTTCATCCGTAGCCTTGCTCAATAAGCCGCTATTAGAAAAAAATTGTAAAAGATTGGACGAGACTCTGAGTGATTCCTATGTTCTAAATGCTAAAACTGATCCCAATAGATTTCCTGCGCAAGGAAATGATGGAAGTGGCGTACAGGTTTCAGAGGTTTTGGATTGTAATGACATTTGTAAGGTTAATAAAGAAGTCTATACCATTAAGGATCTGGATAATGGAAAAGAGTTTATCATAAATGAGATTAGGGAAGATGGTATGTGGGAGAAGCTCAAGGAAAATGATGAGGATGAGAATAAGGATGGTGTATACTCCAGTGTGAATGGGAGTAGTGGGGCCAATTCGAAATCGAAGAAGAAAGGAGGCTGGTTGAAGGGTATAAAAAATGTTGCCAACACCGTGACAGGTTATAAAGAGAGGAGGAGCAGTGAGGAAAGGGATACCTCATCTGAAAAGGGTGGGCGTAGATCAAGTTCTGCCACAGATGATAGCCAAGATGTTTCATTTCAAGGCCAAGAGAGAGTAAGAGTGCGGCAATATGGGAAGTCTAATAAAGAACTGACGGCACTCTATAAGAGCCAGGAGATCCAGGCTCATAATGGCACTATTTGGACCATTAAGTTCAGTTTGGACGGTAAATATCTTGCAAGTGCAGGTGAGGATCGTGTCATTCATGTATGGCAAGTTCTGAAGTCAGAGAGGAAGGGAGAGCTATTGGGAGACAAATCAGAAGAAGGGAACTTGAATTTTTTGTTCTTAGGCAATGGCTCTCCTGAACCAACTTCGTTGTCGCTAAATATGGACAACTATCAAGAAAAAAAGAAATGTGGCAGGTCTTCACTAAGCCGAAAATCATTGAGCTTTGATCAAGTCGTGGTGCCAGAGAGTATCTTTGCTATGTCAGAGAAACCCACCTGCTCCTTCCAAGGACATCTTGATGTTGTTCTTGACCTTTCATGGTCCAAATCTCAGCATTTGCTCTCATCTTCAATGGATAAAACAGTGCGGCTATGGAACTTGTCTAGCCAATCATGTTTAAAAGTATTTTCACACAGTGACTATGTGACATGCATCCAGTTCAATCCCGTTGATGATAGATACTTCATCAGCGGATCTTTAGATGCCAAAGTTCGCATATGGAGTGTCCCAGATCGCCAAGTTGTTGATTGGAGCGATCTGCACGAGATGGTGACTGCTGCTTGCTATACTCCAGATGGCCAGGGTGCATTTGTTGGTTCTTACAAGGGAAGTTGCCATTTGTACAATACATCGGAGAATAAGTTGCAGCAGAAGTCTCAGATCAATCTGCAGAACAAGAAGAAAAAAACTAGTCAGAAAAAGATCACTGGTTTTCAGTTTGTCCCAAGGAGTTCATCTGAAGTGCTCATAACATCTGCAGATTCACGAATCCAAGTTGTTGATGGCGGGGAGCTGGTGCACAAGTTCAAAGGATTTTGCAATACGAACCGCCAAATTTCGGCATACCTTACCTCAAATGGTAAATATGTGGTTTCTGCCAGTGAGGATTCTCAAGTGTATATTTGGAAATACGAGGCAGAATCTCAACCAATCAGAAGCAAAGGCGTCACAGGCACATCCTCTTACGAATACTTTCACTGCCAAGATGTTACTGTTGCAGTGCCATGGCCGGGCATAACGGCTGATGCGTGGCAATTTCAGGATGCTTTAACTGAAGAGCGAAATGAACTGGACAACATTCTTGAAGACTCATCCACTGTCAATCATCCTCCGACGCCTGTTGAGGGCATAAACTACCACGAGGGCTCACTTGGGACCTCTAGCGGCTCTAATAGTCCTCGCCATCATACAATTTCAAGCGTCACCAACAGCTTCTTCTTCGATAGAATCTCCGCTACTTGGCCGGAGGAGAGACTCCAAAGCACTCGAAATCATTGCCCTCAAAGTAGTAATGACATCTCAAATGGAGCAAATGAGAGCTCTTCAGCTTGGGGTATGGCGGCTTCTTTAGTTTCCTCTGGTTTCTCCGTTCCGAAAGAGGGAAAGGCAATTATATCTTACAAAGACTCAAGTTTGTTCGGAGTTTCAATCTCAGATCACCAAAAAGCCGAGTTTTGCTCCTCCGCACTCAGATGCAAGGTAAATTTAGATCAGCTACAGCATCATGTGGGTGCAATTCGGGCACAAACGACAGCCACAACTACTCCGGCAGTGAATAAAGCTACACCAGACGGAAAGAAAACTCTAAGAAAAGGCAGTGTTATTATCACCGGAGCTTCTTCTGGATTGGGTTTAGCCACAGCCAAAGCCTTGGCTGAGACCGGAAAATGGCATGTAATTATGGCCTGCAGAGATTTCCTCAAAGCTGAAAGAGCTGCTAAAGCCACTGGCATGCCCAAAGAAAACTACACCATCATGCATTTAGACCTTGCTTCCCTCGACAGCGTTCGTCAATTTGTCGACAGCTTTAGGCGATCGGGCAGGCCTCTCGATGTGCTAGTCTGCAATGCTGCTGTCTACTTTCCCACTGCCAAGGAGCCTACCTTTTCTGCTGATGGATTTGAGCTTAGTGTTGGTATTAACCATCTTGGCCACTTTCTTCTATCGAGATTGTTGGTCGAAGACTTGAATAAATCTGATTACCCTTCGAGACGACTCGTTATCGTCGGTTCAATCACGGGAAATGATAACACCTTGGCTGGAAATGTGCCTCCTAAGGCAAACCTGGGTGACTTGAGGGGACTTGCCGGAGGGATCAACGGTCTGAACTGCTCATCCATGATCGACGGCGGAGAGTTTGATGGAGCTAAGGCTTATAAGGACAGTAAAGTTTGCAATATGCTTACGATGCAAGAGTTTCACCGGCGATACCATGAGGAAACCGGCATCACATTTGCTTCTCTCTACCCAGGATGCATCGCCACAACTGGGTTGTTTAGGGAGCACATTCCTTTGTTCAGGCTTCTATTTCCTCCTTTCCAAAAGTACATCACGAAAGGCTTTGTCTCGGAGGAAGAATCCGGAAAAAGACTGGCTCAAGTTGTGAGCGATCCAAGCTTGACAAAATCTGGCGTGTATTGGAGTTGGAACAAGGATTCGGCTTCGTTTGAGAATCAATTGTCTCAAGAAGCGAGCGATGCCGACAAGGCTCGAAAAGTGTGGGAAATCAGCGAAAATCTTGTCGGTTTGGCCTAA 3756 44.62 MSKTGDEDGDDDCFYESLDRLVSCSTSNSDSDNDSHSCSPNYGSEHVVSVPKFPVGVSNYDLWAAEPSSVSDRRNRLLHEMGLNKDPSLSRVKFISEDKEKDSAEFSRLVSSDHLNHQAQHNAIILSKSSPDRIVSKHNPSCHSHNDDNKSTFFSSSVCSPSILSAHLIDDSSSCVNSRKHLIFKSQSGKGEGASSVALLNKPLLEKNCKRLDETLSDSYVLNAKTDPNRFPAQGNDGSGVQVSEVLDCNDICKVNKEVYTIKDLDNGKEFIINEIREDGMWEKLKENDEDENKDGVYSSVNGSSGANSKSKKKGGWLKGIKNVANTVTGYKERRSSEERDTSSEKGGRRSSSATDDSQDVSFQGQERVRVRQYGKSNKELTALYKSQEIQAHNGTIWTIKFSLDGKYLASAGEDRVIHVWQVLKSERKGELLGDKSEEGNLNFLFLGNGSPEPTSLSLNMDNYQEKKKCGRSSLSRKSLSFDQVVVPESIFAMSEKPTCSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWNLSSQSCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSVPDRQVVDWSDLHEMVTAACYTPDGQGAFVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKTSQKKITGFQFVPRSSSEVLITSADSRIQVVDGGELVHKFKGFCNTNRQISAYLTSNGKYVVSASEDSQVYIWKYEAESQPIRSKGVTGTSSYEYFHCQDVTVAVPWPGITADAWQFQDALTEERNELDNILEDSSTVNHPPTPVEGINYHEGSLGTSSGSNSPRHHTISSVTNSFFFDRISATWPEERLQSTRNHCPQSSNDISNGANESSSAWGMAASLVSSGFSVPKEGKAIISYKDSSLFGVSISDHQKAEFCSSALRCKVNLDQLQHHVGAIRAQTTATTTPAVNKATPDGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKATGMPKENYTIMHLDLASLDSVRQFVDSFRRSGRPLDVLVCNAAVYFPTAKEPTFSADGFELSVGINHLGHFLLSRLLVEDLNKSDYPSRRLVIVGSITGNDNTLAGNVPPKANLGDLRGLAGGINGLNCSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEEESGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDADKARKVWEISENLVGLA 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42530405 42538611 + BLOR12718 Blo03g01537 59001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01537 1251 Gene3D - 926 1251 - -
Blo03g01537 1251 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 536 - -
Blo03g01537 1251 MobiDBLite consensus disorder prediction 288 315 - -
Blo03g01537 1251 MobiDBLite consensus disorder prediction 24 43 - -
Blo03g01537 1251 MobiDBLite consensus disorder prediction 788 802 - -
Blo03g01537 1251 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Blo03g01537 1251 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Blo03g01537 1251 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Blo03g01537 1251 CDD LPOR_like_SDR_c_like 938 1250 - -
Blo03g01537 1251 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 936 1219 IPR036291 -
Blo03g01537 1251 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Blo03g01537 1251 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 542 IPR001680 GO:0005515
Blo03g01537 1251 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 937 1251 IPR005979 GO:0016630
Blo03g01537 1251 Gene3D - 280 463 IPR015943 GO:0005515
Blo03g01537 1251 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 299 854 - -
Blo03g01537 1251 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Blo03g01537 1251 MobiDBLite consensus disorder prediction 332 353 - -
Blo03g01537 1251 SUPERFAMILY WD40 repeat-like 386 727 IPR036322 GO:0005515
Blo03g01537 1251 MobiDBLite consensus disorder prediction 769 802 - -
Blo03g01537 1251 PANTHER WD REPEAT DOMAIN 44 5 288 IPR040324 -
Blo03g01537 1251 MobiDBLite consensus disorder prediction 328 368 - -
Blo03g01537 1251 Gene3D - 483 743 IPR015943 GO:0005515
Blo03g01537 1251 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 576 - -
Blo03g01537 1251 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 5 288 - -
Blo03g01537 1251 PANTHER WD REPEAT DOMAIN 44 299 854 IPR040324 -
Blo03g01537 1251 PRINTS Glucose/ribitol dehydrogenase family signature 1015 1026 IPR002347 -
Blo03g01537 1251 PRINTS Glucose/ribitol dehydrogenase family signature 940 957 IPR002347 -
Blo03g01537 1251 PRINTS Glucose/ribitol dehydrogenase family signature 1148 1165 IPR002347 -
Blo03g01537 1251 MobiDBLite consensus disorder prediction 825 845 - -
Blo03g01537 1251 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 423 IPR001680 GO:0005515
Blo03g01537 1251 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 576 IPR001680 GO:0005515
Blo03g01537 1251 Pfam WD domain, G-beta repeat 497 533 IPR001680 GO:0005515
Blo03g01537 1251 Pfam WD domain, G-beta repeat 538 575 IPR001680 GO:0005515
Blo03g01537 1251 Pfam WD domain, G-beta repeat 389 421 IPR001680 GO:0005515
Blo03g01537 1251 MobiDBLite consensus disorder prediction 297 311 - -
Blo03g01537 1251 SMART WD40_4 578 616 IPR001680 GO:0005515
Blo03g01537 1251 SMART WD40_4 495 533 IPR001680 GO:0005515
Blo03g01537 1251 SMART WD40_4 383 422 IPR001680 GO:0005515
Blo03g01537 1251 SMART WD40_4 669 710 IPR001680 GO:0005515
Blo03g01537 1251 SMART WD40_4 632 668 IPR001680 GO:0005515
Blo03g01537 1251 SMART WD40_4 536 575 IPR001680 GO:0005515
Blo03g01537 1251 Pfam short chain dehydrogenase 941 1084 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01537 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1024.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g01537 Blo03g00643 ECH
Blo03g00643 Blo03g01537 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01537 Blo-Chr3:42530405 Blo07g00327 Blo-Chr7:4246234 1.04E-106 dispersed
Blo01g01116 Blo-Chr1:40080987 Blo03g01537 Blo-Chr3:42530405 2.02E-161 transposed
Blo03g00643 Blo-Chr3:27416956 Blo03g01537 Blo-Chr3:42530405 5.03E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g260 Blo03g00643 Blo03g01537 Bda07g00287 . . Bpe08g01033 . . . . Cma01g01197 . Car01g01022 Car09g00792 Sed05g2572 Cpe06g00703 Cpe02g00712 Bhi09g03395 Tan01g4418 Cmetu07g1898 . Hepe01g1371 Mch11g1088 . . . . . . . . Cone6ag0131 Cone9ag0156 Cone14ag1074 Cone15ag1067 Lsi04g01319 Csa04g02361 Chy07g00090 . . . . . Bpe11g00490 . Bma07g01189 . . Cmo01g01251 Cmo09g00869 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34