Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01538 ATGGGTAATGAGCAACTATTTTTTGGACTCTCTCAAGTACTACGTAAATTTCCAAAAGAGACAGATAAAGTACTCTGTAATTTTTGCTTCAAGCACAAGAAAGTTACAAATATGGTTTTGGCGGCTGATAATGCTAGAAAAAGTCAATTGTTGATATCAAGCATTATTCTGCTGAAAACTGCTTTGGATGCACTGCCTCTATTGTCAAAGAATAAATTTCAGGTGCTCAAGGAAGCCAAAAGTTTTCTTCTTACGAATATTTATGAGTCAGTGTGTGAAAATGAGAAATATGCTTCCATTAAAAAGAGGATTGGAGAAGTAATTGATGATGATGCGCTTCATGCAAGGGTTCCTTTTGTTGCCCGTACCCAGCAGTGTTTTGCGGTCAAGGCTGGCATTGATGGACTTTTGGATATTGCTCGGAGAACTTTCTGTGACACTAGCGAAGCTATACATAATCTTGCAAACAAATATCGTGAAGATTTTAAATTTCCCAACTTGAAACTACCGTTCAATAGTAGGCAAGGGTTTTTCCTGAGCATTCCACAAAAGGACGTACAAGGAAAGCTACCTAGCAAGTTAATTCAGGTCACAAAACATGGAAACAATATACGCTGCTCAACTTTGGAACTTGCTTCTCTGAATGTTAGAAATAAGTCTGCAGCTGGGGAATGCTATATACGAACAGAAATTTGCCTAGAAGCACTAGTGGATGAGATAAGAAAGGATGTCTCTTTTCTCACACTACTTGCAGAAGTCTTGTGCCTTCTAGACATGCTCGTCAATTCATTTGCTCATACAATTTCTTCAAAGCCTGTTGATCGGTACACTAGGCCACATTTTACTGTTGATGGGCCAATGGCAATTGATGGTGGGAGACACCCCATTTTGGAAAGCATCCACAATGACTTCATTTTTCCTTTTTGGCAGGCCAACAATTTGTTTCTGTCAGAAGCAGCAAACATGGTAATTGTTATGGGCCCAAACATGAGCGGAAAAAGCACTTATCTTCAACAAGTGTGCCTCATAGTTATTCTAGCTCAGATTGGTTGCTATGTTCCTGCCCGATTCTCAACTTTAAGAGTAGTTGATCGTATTTTTACGAGAATGGGTTCAGTGGACAGCCTTGAGTCCAACTCAAGCACATTCATGACAGAAATGAAGGAGACAGCTTATCTTGTGCAGAATGTTTCCCCAAGGAGTCTCATTGTTGTGGATGAACTTGGACGAGCAACTTCTTCCTCTGATGGATTTGCAATTGCATGGAGCTGTTGTGAATATCTGTTGTCACTGAAAGCGTACACTATATTTGCAACGCACATGGAGAACCTCTCAGAATTAGCGACCATGTATCCGAATGTGAAAATTCTTCACTTTCAAGTTGACATAAAGAGTAACAGATTAGATTTCAAGTTTGAACTCAAGGATGGGCAAAGACATGTACCGCATTATGGCCTTCTATTAGCAGAAGTGGCCGGATTACCAAACTCAGTAATTGAAACTGCGAGAGGTATCACTTCCAGGATCACAGAGAAGGTAGTGAGGGAAACGTGGGAATTGACGGGAAAGCGTGTGAAAGATTACACTCTTTACGTTGGGACTATGGGAACTGCTTTCTTGGCCTTTAAAGCTTACCAAGTTACCAAGAATGAAAATGATCTCCGATTATGCTCTGAGATTATCAGAGCTTGCGATTCTGTTTCTGCAGATTCTGGGCTTGTGTCGTTTATCTGTGGAAGAGCTGCTGTTTGTGCTCTTGGTGCAGTGGCAGCTATGCATACTGGCAATGGAAGGCTTCTTAACGATTATCTGGCAAAATTTAAACAGATCAAACTTCCTAATGATTTACCAAATGAATTACTGTATGGGAGATCTGGGTACTTATGGGCCTGTTTGTTCTTGAACAAACAAATCGGCAGAGACGCAATTCCTTCCTCAGACATGAGATGTGTTGTGGATGACATTTTCAAAGCTGGCAGACATATGGGAGCAAAGGAAAAGTCTCCATTGATGTACGAATGGCACGGGAAGAAATATTGGGGTGCTGCTCATGGACTTGCTGGGATTATGCATGTCTTAATGCACATGGAACTCAAACCAGACGAGGCTGAGGAGGTCAAGAACACACTACTTTACATGGTTAAGAATAGATTTAGCAGTGGCAATTATCTCTCCAGCGAAGGAAGTAAATCTGACAGGCTTGTTCATTGGTGCCATGGGGCTCCCGGAATCGCTCTCACCCTCGTAAAAGCAGCTGAGGTTTTTGGAGATAACGAGATTATGCAAGCGGCCATGGATGCTGGCGAGGTGGTATGGGATCGAGGTCTTCTAAAGAGAGTTGGAATCTGCCATGGAGTCAGCGGAAACGCCTACGTGTTTCTCTCGCTCTATCGATTAACGGGTGATGTGAAGTACTTGTACAGAGCGAAAGCATTTGCATGTTTTTTGTATGAAAGAGCAGAAAAACTCATATCGGAGGGGCAAATGAACGGCGGTGATCGACCATATTCATTGTTTGAGGGTGTCGGAGGAATGGCTTATCTGTTTCTGGACATGATCGAACTGTCGGCAGCTCGATTTCCAGCCTTTGAACTATAA 2598 42.07 MGNEQLFFGLSQVLRKFPKETDKVLCNFCFKHKKVTNMVLAADNARKSQLLISSIILLKTALDALPLLSKNKFQVLKEAKSFLLTNIYESVCENEKYASIKKRIGEVIDDDALHARVPFVARTQQCFAVKAGIDGLLDIARRTFCDTSEAIHNLANKYREDFKFPNLKLPFNSRQGFFLSIPQKDVQGKLPSKLIQVTKHGNNIRCSTLELASLNVRNKSAAGECYIRTEICLEALVDEIRKDVSFLTLLAEVLCLLDMLVNSFAHTISSKPVDRYTRPHFTVDGPMAIDGGRHPILESIHNDFIFPFWQANNLFLSEAANMVIVMGPNMSGKSTYLQQVCLIVILAQIGCYVPARFSTLRVVDRIFTRMGSVDSLESNSSTFMTEMKETAYLVQNVSPRSLIVVDELGRATSSSDGFAIAWSCCEYLLSLKAYTIFATHMENLSELATMYPNVKILHFQVDIKSNRLDFKFELKDGQRHVPHYGLLLAEVAGLPNSVIETARGITSRITEKVVRETWELTGKRVKDYTLYVGTMGTAFLAFKAYQVTKNENDLRLCSEIIRACDSVSADSGLVSFICGRAAVCALGAVAAMHTGNGRLLNDYLAKFKQIKLPNDLPNELLYGRSGYLWACLFLNKQIGRDAIPSSDMRCVVDDIFKAGRHMGAKEKSPLMYEWHGKKYWGAAHGLAGIMHVLMHMELKPDEAEEVKNTLLYMVKNRFSSGNYLSSEGSKSDRLVHWCHGAPGIALTLVKAAEVFGDNEIMQAAMDAGEVVWDRGLLKRVGICHGVSGNAYVFLSLYRLTGDVKYLYRAKAFACFLYERAEKLISEGQMNGGDRPYSLFEGVGGMAYLFLDMIELSAARFPAFEL 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42663636 42676417 + BLOR12719 Blo03g01538 59002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01538 865 CDD euk_LANCL 530 861 - -
Blo03g01538 865 SMART mutATP5 320 507 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo03g01538 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 509 IPR027417 -
Blo03g01538 865 Pfam MutS domain V 323 509 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo03g01538 865 SUPERFAMILY LanC-like 523 865 - -
Blo03g01538 865 Pfam MutS family domain IV 132 221 IPR007861 GO:0005524|GO:0006298|GO:0030983
Blo03g01538 865 SMART LANC_like_2 524 865 IPR007822 -
Blo03g01538 865 PRINTS LanC-like protein superfamily signature 618 633 IPR007822 -
Blo03g01538 865 PRINTS LanC-like protein superfamily signature 679 695 IPR007822 -
Blo03g01538 865 PRINTS LanC-like protein superfamily signature 780 793 IPR007822 -
Blo03g01538 865 PRINTS LanC-like protein superfamily signature 734 754 IPR007822 -
Blo03g01538 865 PRINTS LanC-like protein superfamily signature 835 852 IPR007822 -
Blo03g01538 865 PRINTS LanC-like protein superfamily signature 527 545 IPR007822 -
Blo03g01538 865 Pfam Lanthionine synthetase C-like protein 525 865 IPR007822 -
Blo03g01538 865 PANTHER LANC-LIKE PROTEIN GCL2 506 865 - -
Blo03g01538 865 Gene3D - 102 239 - -
Blo03g01538 865 Gene3D - 508 858 - -
Blo03g01538 865 PANTHER LANC-LIKE PROTEIN 506 865 - -
Blo03g01538 865 Gene3D - 276 507 IPR027417 -
Blo03g01538 865 SMART DNAend 1 300 IPR007696 GO:0005524|GO:0006298|GO:0030983
Blo03g01538 865 SUPERFAMILY DNA repair protein MutS, domain III 2 265 IPR036187 -
Blo03g01538 865 PRINTS Eukaryotic LanC-like protein family signature 796 814 IPR020464 -
Blo03g01538 865 PRINTS Eukaryotic LanC-like protein family signature 714 729 IPR020464 -
Blo03g01538 865 PRINTS Eukaryotic LanC-like protein family signature 751 772 IPR020464 -
Blo03g01538 865 PRINTS Eukaryotic LanC-like protein family signature 648 663 IPR020464 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01538 K08740 MSH4; DNA mismatch repair protein MSH4 - qsu:112028045 870.152
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01538 Blo-Chr3:42663636 Blo15g00557 Blo-Chr15:11053097 8.76E-143 dispersed
Blo03g01538 Blo-Chr3:42663636 Blo09g00106 Blo-Chr9:1980361 5.32E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007404 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 1 0 33