Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01548 ATGGCTTCTACTAATGCATTCCTAACTACTCCGAACAAGACCCCGTCGGAAAAGTCACACTCCATGCCCAGAAAACACCTTCTTCATCACCAGAACAATCAGGGATCTGAGTCCGTAGATTCGGGCGGGTTGAAGTCCAGATTTGAGGCTTATAATCGTCTGCAAGCAGCTGCCGTTGCGTTCGGCGAGAAACTTCCTATACCTGAGATCGTAGCACTTGGTGGACAGTCTGATGGAAAGAGCTCGCTTCTTGAAGCCCTGCTTGGGTTTCGCTTCAATGTTCGTGAGGTGGAGATGGGTACTCGAAGGCCTCTGATTCTCCAAATGGTTCACGACCCCACGGCTCTAGAACCGCGCTGTCGAATTCAGGAGGAGGATTCGGAGGAATATGGAAGCTCAGTAGTATTGGCTTCCGCAATTGCCGACATTATTAAATCAAGAACTGAGGCATTATTGAAGAAATCCAAAACTTCAGTTTCTTCTAAGCCAATTGTGATGAGGGCTGAGTATGCACATTGTCCCAATCTCACCATTATTGATACTCCTGGCTTTGTCCTTAAGGCAAAGAAGGGTGAACCAGATAATACTCCCGAAGAAATTCTTTCGATGGTAAAGTCATTGGCAAGTCCCCCTAACCGCATTCTTGTGTTCCTGCAACAGAGTAGTGTTGAGTGGTGCTCATCTTTGTGGTTGGATGCTATCCGTGAAATTGATCCAACATTTAGACGTACTGTAATTGTAGTCTCGAAATTCGATAATCGTTTGAAGGAGTTCAGTGATCGATGGGAAGTGGACCGATATTTAAGTGCAAGCGGTTACCTTGGAGATAATATTCGACCATTTTTTGTTGCCTTGCCTAAGGATAGGAATACTGTTTCAAATGATGAGTTCCGTCGACAAATATCTCATGTTGACTCAGAAGTTCTACGACATCTACGTGAGGGTGTTAAGGGAGGATTCGATGAAGAAAAATTCAGATCATGTATTGGTTTTGGGTGCCTGAAAGAATATTTAGAATCTGAGCTTCAGAAAAGATACAAAGAAGCTGCCCCAGCAACTCTAGCCTTGCTTGAGCAGCGCTGCAATGAAGTTGCTTGTGACTTAGAGAGAATGGAATCAAAGATACTGGCCAATTCTGACATTGGACATCTCCGGCGATCGGCAATGTCGTATACTGCTTCTGTTTGCAATCACGTGGGTGCCTTACTTGATGGAGCAGCAGATCCTGCGCCAGAGCAATGGGGGAAAACTACTTTTGAGGAGCAATCAAGAAGCAGGTTTGCAAATTGGCCTGGTGTAATTGCAGATGTGAAGCCTCCCAATGCGACTCTTAGATTGTATGGTGGTGCTGCTTTTGAAAGGGTGATGCTTGAATTTAGGTGTGCTGTATATTCCATTGAGTGCCCCTCAGTTTCACGGGAGAAGGTAGCAAATATACTGCTTGCCCATGCCAGCAGAGGTGGAAGCAAGGGTCTGACAGAAGCTGCTGCAGAGATTGCACGTGCTGCTGCTAGATCATGGCTTTCTCCTCTTCTTGACACAGCTTGTGACCGGCTTGCTTTCGTTTTGGAGAATCTATTTGATCTTGCTCTTGAAAGGAATCGTATTCGTGACTTAGAATATGAAAGAAAGCCAGGTACCATGGATGGCTATGTTGGTTTTCATGCTGCTTTAAGGCAGGTGTACTATCGTTTTGTAAAGAATCTTGCCAAACAGTGCAAGCAACTTGCTAAGCACCATCTTGATTCTGTTACTAGTCCATATTCGCTAGTCTGTTACGAGAATGAATATGGAGGATCTTATTTAAGCTCAGCATCTCTTCACAAATTCACTCAAACTTCAGCTGGTTCATTTTTATTTGAGTTATCTGAAGAATCAGTGGCATCTCGTGGTGAGATCAAGCATCAGGACAATATACCTCCAGAAAAGAATTTGCAGCAAAATACGCCAGGCAAAGGTACAGAATCAAAAGACGTCTTAAGAGAAAGTGAAATGACAGTGCCCGAGACCCCATCCCCTGATCAGCCTTGTGATGGTTTATATGGCGGAGCCAAGAAAGATCTTGGAAATATGGTGGACATTGGAGCAAAGAAGCGGGCTTCAAGAATAATTGGAAATAACAGAAATTGCGATCGCACTAAGAGTCAAGATGGTGTTGGAGGCATATTCGGAAATGCCGATGGCCATTCAAGAACCACCACAACTTACTCGCAAATTTGCTTATTAGCTGCACAACATTTTTCCCGGATTCGTGAAGTTCTTGTGGAGCAAAGTGTTGCATCGACTTTGAACTCTGGATTCTTAACACCTTGCCGGGAAAAGCTTGTGGTGGAACTTGGCCTGGAGTTGTTCGCTGTTAATGACGAGAAATTCATGGACATGTTTGTTGCTCCTGGAGCCATTGACGTCCTTCAGAACGAACAACAATCCCTTCAAAAACGGCAAAAAATTTTGCAAACTTGCTTGAAGGAGTTCAAAAGCGTGGCTCGCTCCCTT 2496 44.55 MASTNAFLTTPNKTPSEKSHSMPRKHLLHHQNNQGSESVDSGGLKSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALEPRCRIQEEDSEEYGSSVVLASAIADIIKSRTEALLKKSKTSVSSKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPDNTPEEILSMVKSLASPPNRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGDNIRPFFVALPKDRNTVSNDEFRRQISHVDSEVLRHLREGVKGGFDEEKFRSCIGFGCLKEYLESELQKRYKEAAPATLALLEQRCNEVACDLERMESKILANSDIGHLRRSAMSYTASVCNHVGALLDGAADPAPEQWGKTTFEEQSRSRFANWPGVIADVKPPNATLRLYGGAAFERVMLEFRCAVYSIECPSVSREKVANILLAHASRGGSKGLTEAAAEIARAAARSWLSPLLDTACDRLAFVLENLFDLALERNRIRDLEYERKPGTMDGYVGFHAALRQVYYRFVKNLAKQCKQLAKHHLDSVTSPYSLVCYENEYGGSYLSSASLHKFTQTSAGSFLFELSEESVASRGEIKHQDNIPPEKNLQQNTPGKGTESKDVLRESEMTVPETPSPDQPCDGLYGGAKKDLGNMVDIGAKKRASRIIGNNRNCDRTKSQDGVGGIFGNADGHSRTTTTYSQICLLAAQHFSRIREVLVEQSVASTLNSGFLTPCREKLVVELGLELFAVNDEKFMDMFVAPGAIDVLQNEQQSLQKRQKILQTCLKEFKSVARSL 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43123941 43128592 + BLOR12729 Blo03g01548 59012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01548 832 MobiDBLite consensus disorder prediction 640 654 - -
Blo03g01548 832 Pfam Dynamin family 70 250 IPR045063 -
Blo03g01548 832 MobiDBLite consensus disorder prediction 1 42 - -
Blo03g01548 832 SMART dynamin_3 44 287 IPR001401 GO:0003924|GO:0005525
Blo03g01548 832 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 64 351 IPR030381 GO:0005525
Blo03g01548 832 PANTHER DYNAMIN-LIKE PROTEIN C 44 832 - -
Blo03g01548 832 PANTHER DYNAMIN 44 832 IPR022812 -
Blo03g01548 832 PRINTS Dynamin signature 92 109 IPR022812 -
Blo03g01548 832 PRINTS Dynamin signature 239 255 IPR022812 -
Blo03g01548 832 PRINTS Dynamin signature 67 85 IPR022812 -
Blo03g01548 832 PRINTS Dynamin signature 170 187 IPR022812 -
Blo03g01548 832 Coils Coil 354 374 - -
Blo03g01548 832 CDD DLP_1 65 351 IPR001401 GO:0003924|GO:0005525
Blo03g01548 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 358 IPR027417 -
Blo03g01548 832 MobiDBLite consensus disorder prediction 1 17 - -
Blo03g01548 832 MobiDBLite consensus disorder prediction 631 677 - -
Blo03g01548 832 Gene3D - 41 396 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01548 - - - zju:107422425 1264.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01548 Blo-Chr3:43123941 Blo04g01300 Blo-Chr4:27604546 1.48E-10 dispersed
Blo03g01548 Blo-Chr3:43123941 Blo03g00251 Blo-Chr3:5367150 7.34E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27