Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01549 ATGACTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCGAGAAAAGCGACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTGAGCGAACTGACGACCCTTTGCGGGATCGATGCTTGCGCCATCATCTACAGCCCCTACGACTCTCAGCCTGAGGTGTGGCCTTCTGCTGGGGGAGTCCAGCGCGTGGTGGGGCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTTCTTCGCCAACGGATTGCCAAAGCGCAAGAGTTGTTGAAGAAGCAAAGGAAGGAGAACCGAGAGAAGGAAATGCGCCGATTAATGTTCGACTGCCTCACCGGAGCGAAGGACCTGCACAGCATGAGCATGATGGAGCTGAACGAGACGGGGTGGTTGGTTGATAGCACACTCAAGGATGTCAACAAGAGGATTGAGTCGCTCCAGAAAGAGGCCGCCACCGCCAGTCGTACTAATATCGCCCACCCAGTCAACCCAGCAGTGGGCGGAGGCTTAGCGGCAACAGAAGATGGTTTCGCGGGGAGAGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATGGACTTTGGTGTGGACGACATGATTCTGCCACTTATTATCGTTCGATCTCTAACAAAACTATTACAACAACGGCGGCAACAACACTTTGAAGAAACCTTGCACAGTTACTTGAGGGACTTGGATTTGAAGCGTGAAGCTTTGATGAAAACGCTGAAGAGCCTCCTGCCTAACTATGAGGAGATAGATGGATCGGCCGATCAAGTTAATACTATCAACAACAACAATTCAATCAAGGAATTTGATATCTTATTCCCCATTGAGAAAGAAATCGAAGATGTCGAGGTTGTCGATATGAGACTAGAGGTGGGATTCAAAGCTGAGCCAGCGGAGGTAAAAGAAAAATGGGTAAACACCGGTTTGACAAAGAGCCTTGCCATAGTCGCTCGCCCAACTTTTTGGTCTGTCCTAAATGTTGCTCCATCGGTTGTTTCCTCGACAAAACCTAAGGAGGTCTCTACTAGGAAGACAGCCAATTCCACTACTCAAGTTTCTTTCACAACTCACTCAGATCATATCAGAAAATGA 1131 48.19 MTRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSAGGVQRVVGQFKKMPEMEQSKKMVNQESFLRQRIAKAQELLKKQRKENREKEMRRLMFDCLTGAKDLHSMSMMELNETGWLVDSTLKDVNKRIESLQKEAATASRTNIAHPVNPAVGGGLAATEDGFAGRGWEKEEPWFMDMDFGVDDMILPLIIVRSLTKLLQQRRQQHFEETLHSYLRDLDLKREALMKTLKSLLPNYEEIDGSADQVNTINNNNSIKEFDILFPIEKEIEDVEVVDMRLEVGFKAEPAEVKEKWVNTGLTKSLAIVARPTFWSVLNVAPSVVSSTKPKEVSTRKTANSTTQVSFTTHSDHIRK 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43144185 43146124 - BLOR12730 Blo03g01549 59013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01549 376 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Blo03g01549 376 Coils Coil 146 166 - -
Blo03g01549 376 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Blo03g01549 376 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo03g01549 376 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Blo03g01549 376 MobiDBLite consensus disorder prediction 352 369 - -
Blo03g01549 376 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Blo03g01549 376 Coils Coil 87 114 - -
Blo03g01549 376 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 172 - -
Blo03g01549 376 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Blo03g01549 376 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo03g01549 376 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo03g01549 376 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo03g01549 376 MobiDBLite consensus disorder prediction 352 376 - -
Blo03g01549 376 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01549 Blo-Chr3:43144185 Blo17g00232 Blo-Chr17:2376899 4.59E-70 dispersed
Blo13g00277 Blo-Chr13:14245215 Blo03g01549 Blo-Chr3:43144185 3.81E-06 dispersed
Blo01g01250 Blo-Chr1:47469483 Blo03g01549 Blo-Chr3:43144185 1.34E-32 transposed
Blo03g00659 Blo-Chr3:28020259 Blo03g01549 Blo-Chr3:43144185 1.89E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12195 PF00319 SRF-TF 3.70E-18 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01549 - - vvi:100254549 261.536