Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01555 ATGCAGTCAAGATTCAGAGAGTTGAGGAAAATTAGCTGGGAAATTGCGAGATGGAGATACAAATTGGATTCTCCAACCCAACCGATCAGATTCTTTCATGGCGATCCCATTTTGCAGAAACCACTTCCTCGTAGCGTTTTTCATTTTCTGAGACCAAGACACTCCAATTCTAAATTCATTACCAACGATTTTGATCTTTCGTCTCTCTGGGTAGTTCAGAAATGCCGCTCGTTGCACTCAGCCGCTGATTTAGATGATAAACCAGACGATCAATTCGCCATTTTCGTCCAAAACATTCTTAAACACAGAAGGGAGAAGCCGCTGGAGGAGATCAAGCGAGCATTGGATCGATGTGCGCTCGCTCTGACAAATGATTTCGTTCTGAGCGTGCTCCGACGACATCGATCAGATTGGAAATCAGCTCTCGCCTTCTTCCGCTGGGTTTCCCAAAAAAATGGTTATGCCCCTGCATCCGAGGTTTACAACGAAATTCTGGACATTCTCGGAAAAATGCGCCGTTTCGATGAAGTAGCCAACGTGTTCGACGAAATGTCACAAAGAAAAGATGTTCTGAACGAGGCAACCTACGGGGTTTTACTCAACAGATTTGCAGCATCTCATAAGATCGAGGAAGCCATTAACATCTTCCACAAAAGAAGTGAGTTCAAGATCAGCAGTAATCTCGTCGCATTTCAGAAACTTTTGATGTGGTTTTGCAGATACAAGCACGTAGAAGTTGCAGAGACATTATTTTACTCAAAACAACTAGAGTTTTCCTCAGATATAAAGACAAGAAACATAATCCTAAATGGTTGGTGCGTTTTGGGCAATTTACACGAAGCAAAGAGATTTTGGAATGAAACAATCAAATCTAAATGCAAGCCCGACAAGTTTACTTACGGGACGTTCATTAATGCATTGACTAAAAAGGGTAAAATAGGCGCAGCTTTGAAGTTGTTTAAAGCCATGTGGGAAAAGGGTTTCAACCCAGACGTCGTAATCTGCAACTCCATTGTCGACTCGCTCTGTTTCAAGAAGAGAATTCCAGAAGCTCTGCAAGTCTTCAAGGAAATGAACGAAAGAGGCTGTGCTTCGAATGTGGCTACGTACAACTGTTTAATCAAGCACCTCTGCAAGATTCAGAGATTCGAAAAGGTAGCCGAGCTTTTGGATGAAATGGAAGGTAAGAAATCGGGTTGTAGTCCAAACTCTCTAACTTTCGTTTACTTGCTTAAGGCGGCAAAAGAGCCGGAAAGAGTTGATGAAGTTCTAAAGAGAATGGGGAGAAATGGATGCAAAATGAGCAGTGATGTGTATAATTTGTTGCTGAGATTGTATATGAAGTGGGATCGTCAAGATAAAGTGAAGATGGTTTGGGATCGGATGGTTGAAAACAACTTGGGACCCGATCAACGATCGTATATTGTTATGATTCATGGGTTATGCGAGAAAGGAAGTCTGAAAGATGCTTTGTTTTATCACAGGGAGATGATAGCAAAAGGAATTCAGCCAGAGCAGAGGACTGAAATGCTGCTTGATTCCCTCAAGATCAAGTTGCAGGAGAGAAAGAAGTAA 1575 42.16 MQSRFRELRKISWEIARWRYKLDSPTQPIRFFHGDPILQKPLPRSVFHFLRPRHSNSKFITNDFDLSSLWVVQKCRSLHSAADLDDKPDDQFAIFVQNILKHRREKPLEEIKRALDRCALALTNDFVLSVLRRHRSDWKSALAFFRWVSQKNGYAPASEVYNEILDILGKMRRFDEVANVFDEMSQRKDVLNEATYGVLLNRFAASHKIEEAINIFHKRSEFKISSNLVAFQKLLMWFCRYKHVEVAETLFYSKQLEFSSDIKTRNIILNGWCVLGNLHEAKRFWNETIKSKCKPDKFTYGTFINALTKKGKIGAALKLFKAMWEKGFNPDVVICNSIVDSLCFKKRIPEALQVFKEMNERGCASNVATYNCLIKHLCKIQRFEKVAELLDEMEGKKSGCSPNSLTFVYLLKAAKEPERVDEVLKRMGRNGCKMSSDVYNLLLRLYMKWDRQDKVKMVWDRMVENNLGPDQRSYIVMIHGLCEKGSLKDALFYHREMIAKGIQPEQRTEMLLDSLKIKLQERKK 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43261360 43262934 - BLOR12736 Blo03g01555 59019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01555 524 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 66 523 - -
Blo03g01555 524 Pfam PPR repeat family 330 379 IPR002885 -
Blo03g01555 524 Pfam PPR repeat family 261 308 IPR002885 -
Blo03g01555 524 Pfam PPR repeat family 438 482 IPR002885 -
Blo03g01555 524 Gene3D Tetratricopeptide repeat domain 397 516 IPR011990 GO:0005515
Blo03g01555 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Blo03g01555 524 Pfam PPR repeat 160 187 IPR002885 -
Blo03g01555 524 Gene3D Tetratricopeptide repeat domain 91 254 IPR011990 GO:0005515
Blo03g01555 524 Gene3D Tetratricopeptide repeat domain 255 323 IPR011990 GO:0005515
Blo03g01555 524 Gene3D Tetratricopeptide repeat domain 324 396 IPR011990 GO:0005515
Blo03g01555 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 396 IPR002885 -
Blo03g01555 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Blo03g01555 524 PANTHER OS01G0151900 PROTEIN 66 523 - -
Blo03g01555 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Blo03g01555 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Blo03g01555 524 TIGRFAM PPR: pentatricopeptide repeat domain 160 187 IPR002885 -
Blo03g01555 524 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Blo03g01555 524 TIGRFAM PPR: pentatricopeptide repeat domain 473 504 IPR002885 -
Blo03g01555 524 TIGRFAM PPR: pentatricopeptide repeat domain 438 470 IPR002885 -
Blo03g01555 524 TIGRFAM PPR: pentatricopeptide repeat domain 369 403 IPR002885 -
Blo03g01555 524 TIGRFAM PPR: pentatricopeptide repeat domain 298 332 IPR002885 -
Blo03g01555 524 TIGRFAM PPR: pentatricopeptide repeat domain 266 296 IPR002885 -
Blo03g01555 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01555 - - - mcha:111010467 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01555 Blo-Chr3:43261360 Blo07g00038 Blo-Chr7:647733 1.46E-72 dispersed
Blo03g01555 Blo-Chr3:43261360 Blo11g00737 Blo-Chr11:9909086 2.85E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g182 . Blo03g01555 . . . Bpe08g01011 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005725 1 10 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 39