Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00005 ATGTCTCAGATGATTCAAACCCACCCTTCTCTTCAGTCGATAAAATCATTGCCAGCTAATTATCGAGCTATGGGTTATCAAGTCTCTAACAGCTTGAAAGAGTCCCGAGGTTTGAATATTGGAAGTGGGAAAATAGGCTCGTTAACTATTCCTGAAAATGGTGCATTAGCAGATGGAATTGTTGAGAGATTTCAGAACAATGATGACGACTCACCCTATTCGGAGAGTGTGATAACAGTCAAAGAAAGGCCTGCTTTAGGTGACAGAGATGTTGGTTCCATCGCATTGCCTTCGCATCCAACTGTTGCATCACATGGTCAATACAAGTGGGATGACACTTCCTCCTACACGACCAAGAAGGTACTTCAATCTTGGTTTCAACTTCCAGATGGTAAGTGGGAGCTGATAAAGCTGCTGTCTGTGTCAGGAACTGAATCTGTCATTTTACTGCCTGATGGGAAAGTTTTAAAAATTAAACCTGAGAGTTTGATGCCAGCAAATCCTGATATTCTTGATGGTATAGATGATCTGATGCAACTTAGTTATTTAAACGAACCATCAGTTTTATACAATCTTCAATGCAGATACAATCAAGATATGATTTATACTAAAGCTGGGCCAGTGCTGGTTGCTATCAATCCCTTTAAGAAAGTTGCTTTATATGGAAATGATTACATTGAAGCATACAAGAATAAATCCATTGAGAGTCCGCATGTGTATGCCATTACTGATACAGCTATACGTGAAATGATACGAGATGAAGTTAATCAATCAATCATTATAAGTGGTGAAAGTGGAGCAGGAAAAACAGAAACTGCAAAAATAGCAATGCAATATTTGGCTGCGATTGGTGGTGGCAGTGGAATCGAATATGAAGTTTTGAAGACGAATCCAATTTTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCTAGTCGCTTTGGAAAATTGATTGAAATTCACTTCAGTGAAAGTGGAAAAATATCTGGTGCGAATATTCAGACGGTTGTTCAATGCATGAAGAATGAAAGGTCATATCATATATTTTATCAGCTCTGTGCTGGAGCTCCTCCTTCTCTGAGAGAGACTCTAAATTTAAAGAGTGCACACGAGTACAAATATCTGAGCCAGAGTGAATGTTATTCAATTGCTGGGCTCAATGATGCAGATCAATTCCGGATTGTTATGGAAGCTCTTGATATTGTTCACATCCACAAGGAGGACCAGCAGAGTGTGTTTGCCATGATTGCTGCTGTGTTATGGCTCGGAAACGTTACATTTTCCGTGATAGACAATGAGAACCACGTTGAAGCCGTAGCTGATGAAGGTCTATTTACTGTTGCTAAATTGATTGAATGTAACATTGAAGAGCTAAGTCTGGCTTTAGCTACTCGGAATATGAGAGTTGGGAATGATAATATTATCCAGAAGTTAACACTATCACAATATGACTTGCTTGCAATTGATGCCAGAGATGCTTTGGCTAAGTCAATTTATGCATGTCTGTTTGAGTGGCTCGTTGAACAAATCAACAAATCTCTTGTTGTAGGCAAACGGCGAACTGGCAGATCCATTAGTATTCTGGATATCTATGGCTTTGAATCATTTGATCGTAATAACTTTGAACAGTTCTGCATAAATTATGCCAATGAACGACTCCAACAACATTTCAATCGTCATCTGTTCAAGCTAGAGCAAGAGGAATATATCCAAGATGGGATTGACTGGACAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGCCTATTTGAAAAGAAACCCTTGGGTTTATTGTCCCTGTTAGATGAAGAGTCCACATTTCCAAATGGCTCAGATTTGACCTTTGCTAACAAGCTGAAGCAGCATCTGAATTCTAATCCTTGCTTCAGAGGAGAACGAGGCAAAGCCTTTACTGTTTGTCATTATGCTGGGGAGGTTATGTATGAGACAACTGGATTTTTGGAGAAAAACAGGGACTTATTGCACCTAAATTCCATTAAGCTTCTGTCCTCTTGTTCACTTGAACTTCCTCAGATATTTGCGTCTAGCTTGCTTAATCAATCGGAGAAGCCAGTGGTTGGTCCTTTACATAAATCAGGTGGTGCTGACTCCCAGAAATTAAGTGTGGCAACTAAGTTTAAGGTTCAATTGTTTCAATTGATGCAACGACTTGAGAATACCACTCCACATTTCATACGCTGTATCAAGCCAAACAACCTTCAGTGTCCTGGATTGTACGAGCAAGGACTTGTACTGCAGCAATTGAGATGTTGCGGAGTCCTAGAAGTAGTTAGAATATCACGATCTGGTTTCCCTACCAGGATGTCGCATGAAAAGTTTGCTAGAAGGTACGGTTTTCTTCTACTGGAGAGTGTTGCATCTCAGGATCCACTAACTGTTTCTGTAGCGATTCTTCATCAGTTTAATATATTACCTGAAATGTACCAAGTTGGGTATACAAAACTGTTTTTCCGAACTGGACAGATTGGAGTGCTTGAAGATACCAGAAATCGCACCTTACATGGTGTCTTACGTGTTCAAAGCTGCTTCAGAGGACACCAAGCTCGTTGCTACCATAAGGAACTGAGGAGAGGAATTATTACTCTTCAATCATTTATACGTGGAGAGAAAACCAGGGAAGAATTTTCAGTCTTATTACAGACACATAGAGCGGCAGTGATGATTCAGAAGAGAATTAGAGGCTGGATTATTAGAAACCGATTAAAGAAAAAATTTGATGCATCTGTCATAATTCAATCAGTTATTCGTGGTTGGCTGGTCAGACAATGCTCAGGAAATATAGGATTACTGACACAAGGGGGTGTTAAGGCAAATGAGTCAGACGAGGTGCTCGTGAAGTCTTCATTCCTTGCAGATTTACAGCGTCGTGTCCTTAAGTCCGAGGCAGCCTTTAGAGAGAAAGAAGAAGAGAATGAGATTCTCCAACAACGGCTGCAACAATATGAAAATAGGTGGTCGGAATATGAACTAAAAATGAAGTCAATGGAGGAAGTGTGGCAGAAACAAATGAGATCCTTACAATCCAGCCTTTCCATTGCAAAGAAGAGCCTAGCCCTTGATGATTCCGAGAGAAACTCTGATGCATCTGTAAATGTGAGTGATGAAAGAGAGTGTACGTGGGAAACAGGAAGTAACAAGGGACAGGAAAGCAATGGGGTGAGACCTATGAATGCAGGTTTGAGCGTGATAAGCCGGTTGGCAGAGGAATTTGAGCAAAGGAGTCAAGTTTTTGGGGACGATGCCAAATTCTTGGTGGAAGTGAAATCAGGTGAGGTGGAAGCAAGCTTGGATCCAGATAGGGAGCTGAGGAGGTTAAAGCAGATGTTTGAAGGTTGGAAAAAGGATTATGGGGCGAGACTGCGGGAAACAAAGGTGATTTTAAACAAGCTTGGTAGTGAAAGGGGTGTTGATAGGATGAAAAAGAAGTGGTGGGAAAGGAGGAACAGCTCAAGGTTTTCTTGA 3495 40.63 MSQMIQTHPSLQSIKSLPANYRAMGYQVSNSLKESRGLNIGSGKIGSLTIPENGALADGIVERFQNNDDDSPYSESVITVKERPALGDRDVGSIALPSHPTVASHGQYKWDDTSSYTTKKVLQSWFQLPDGKWELIKLLSVSGTESVILLPDGKVLKIKPESLMPANPDILDGIDDLMQLSYLNEPSVLYNLQCRYNQDMIYTKAGPVLVAINPFKKVALYGNDYIEAYKNKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAIGGGSGIEYEVLKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSESGKISGANIQTVVQCMKNERSYHIFYQLCAGAPPSLRETLNLKSAHEYKYLSQSECYSIAGLNDADQFRIVMEALDIVHIHKEDQQSVFAMIAAVLWLGNVTFSVIDNENHVEAVADEGLFTVAKLIECNIEELSLALATRNMRVGNDNIIQKLTLSQYDLLAIDARDALAKSIYACLFEWLVEQINKSLVVGKRRTGRSISILDIYGFESFDRNNFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGSDLTFANKLKQHLNSNPCFRGERGKAFTVCHYAGEVMYETTGFLEKNRDLLHLNSIKLLSSCSLELPQIFASSLLNQSEKPVVGPLHKSGGADSQKLSVATKFKVQLFQLMQRLENTTPHFIRCIKPNNLQCPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHEKFARRYGFLLLESVASQDPLTVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGVLRVQSCFRGHQARCYHKELRRGIITLQSFIRGEKTREEFSVLLQTHRAAVMIQKRIRGWIIRNRLKKKFDASVIIQSVIRGWLVRQCSGNIGLLTQGGVKANESDEVLVKSSFLADLQRRVLKSEAAFREKEEENEILQQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLALDDSERNSDASVNVSDERECTWETGSNKGQESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGEVEASLDPDRELRRLKQMFEGWKKDYGARLRETKVILNKLGSERGVDRMKKKWWERRNSSRFS 1164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 53343 68120 - BLOR12917 Blo04g00005 59033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00005 1164 SMART MYSc_2a 166 842 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 CDD MYSc_Myo8 186 829 IPR036022 -
Blo04g00005 1164 Gene3D Myosin VI head, motor domain, U50 subdomain 404 516 - -
Blo04g00005 1164 Gene3D Kinesin motor domain 171 774 IPR036961 -
Blo04g00005 1164 Pfam Myosin head (motor domain) 175 829 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 ProSiteProfiles IQ motif profile. 866 895 IPR000048 GO:0005515
Blo04g00005 1164 Gene3D - 892 934 - -
Blo04g00005 1164 Gene3D - 775 842 - -
Blo04g00005 1164 Gene3D - 845 891 - -
Blo04g00005 1164 SMART iq_5 865 887 IPR000048 GO:0005515
Blo04g00005 1164 SMART iq_5 891 913 IPR000048 GO:0005515
Blo04g00005 1164 SMART iq_5 842 864 IPR000048 GO:0005515
Blo04g00005 1164 SMART iq_5 914 936 IPR000048 GO:0005515
Blo04g00005 1164 Gene3D - 539 731 - -
Blo04g00005 1164 ProSiteProfiles IQ motif profile. 845 872 IPR000048 GO:0005515
Blo04g00005 1164 ProSiteProfiles Myosin motor domain profile. 172 841 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 ProSiteProfiles IQ motif profile. 892 919 IPR000048 GO:0005515
Blo04g00005 1164 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 119 168 IPR004009 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1163 - -
Blo04g00005 1164 Coils Coil 961 1009 - -
Blo04g00005 1164 PRINTS Myosin heavy chain signature 580 608 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 PRINTS Myosin heavy chain signature 202 221 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 PRINTS Myosin heavy chain signature 256 281 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 PRINTS Myosin heavy chain signature 298 325 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 PRINTS Myosin heavy chain signature 527 555 IPR001609 GO:0003774|GO:0005524|GO:0016459
Blo04g00005 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 889 IPR027417 -
Blo04g00005 1164 PANTHER MYOSIN 9 1163 - -
Blo04g00005 1164 MobiDBLite consensus disorder prediction 1043 1066 - -
Blo04g00005 1164 Pfam IQ calmodulin-binding motif 918 933 IPR000048 GO:0005515
Blo04g00005 1164 Pfam IQ calmodulin-binding motif 893 913 IPR000048 GO:0005515
Blo04g00005 1164 Pfam IQ calmodulin-binding motif 847 864 IPR000048 GO:0005515
Blo04g00005 1164 Pfam IQ calmodulin-binding motif 867 886 IPR000048 GO:0005515
Blo04g00005 1164 Gene3D - 347 403 - -
Blo04g00005 1164 MobiDBLite consensus disorder prediction 1034 1066 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01423 Blo-Chr3:40799765 Blo04g00005 Blo-Chr4:53343 0 dispersed
Blo04g00005 Blo-Chr4:53343 Blo04g00428 Blo-Chr4:3505954 0 dispersed
Blo04g00005 Blo-Chr4:53343 Blo18g00260 Blo-Chr18:2747475 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00005 - K10357 vvi:100254832 1827.37