Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00007 ATGGGACGCGGAAAGATAGAAATCAGGAGAATTGAGAAGCAAACGAGCAGGCAAGTCACATTCTCCAAGCGTCGATCTGGGCTTCTGAAGAAGACTCATGAACTCTCAGTTCTTTGCGATGCTCAGATTGGCCTCATCGTCTTCTCTAGCACTGGAAAATTATGCCAATACTGCACTCAACCGCTCAGAATGGAGGATCTCATTGAAAGATATTGCAATGTTACTGGAGCAGACCGCATTACTGGGAATGATAACAGGGGGGAGTTGCTATACGAAGAAATGGAGATGCTGATGAAGGAAGTTGGGAATCTGGAAGAGAACATACAGAGATACAACGGGGAGGGAGTGAGGTGTTTGGGTTACCAGGAGTTGGATCGGCTTGAACGTGACCTTGAACGTTCTGTCTACAAGGTCAGAGCTCGAAAGAATGAGCTCTTGCAGCAGCAACTTGACAATTTGCGCAGGAAGATTCAGGAGCATAACAATCGCGGGGCACTAGAGTTGGAGCAGCAAGCAGCATTTATGGAGGGAAAGGAAGAAATGGCGGATGATGGATTTCCATTCTTCGGGGAGCAACCGAGCAGTGTTCTTCAGCTGGGTCCGGTCCCTTCTCAGCCTCGTTCCTATCATCTTCAACTTGGCCAACCCACACTCCAGACCTTGAGTCCTACTCCATTTCATTTCAAGTAG 690 48.12 MGRGKIEIRRIEKQTSRQVTFSKRRSGLLKKTHELSVLCDAQIGLIVFSSTGKLCQYCTQPLRMEDLIERYCNVTGADRITGNDNRGELLYEEMEMLMKEVGNLEENIQRYNGEGVRCLGYQELDRLERDLERSVYKVRARKNELLQQQLDNLRRKIQEHNNRGALELEQQAAFMEGKEEMADDGFPFFGEQPSSVLQLGPVPSQPRSYHLQLGQPTLQTLSPTPFHFK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75548 77052 - BLOR12919 Blo04g00007 59035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00007 229 Coils Coil 136 170 - -
Blo04g00007 229 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Blo04g00007 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Blo04g00007 229 Coils Coil 87 114 - -
Blo04g00007 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo04g00007 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo04g00007 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo04g00007 229 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Blo04g00007 229 Pfam K-box region 87 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo04g00007 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo04g00007 229 ProSiteProfiles K-box domain profile. 87 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo04g00007 229 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 219 - -
Blo04g00007 229 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Blo04g00007 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo04g00007 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo04g00007 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00007 Blo-Chr4:75548 Blo14g00857 Blo-Chr14:31482245 4.87E-37 dispersed
Blo04g00007 Blo-Chr4:75548 Blo11g00805 Blo-Chr11:12765549 2.71E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12201 PF01486 K-box 1.90E-14 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00007 - - tcc:18608483 247.284