Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00057 TTTCTCTTGACCTATTTGTGTTCTTCAGCCATGGCTGCCCTCAATCTCACCATTCCTCATCAGTATCCTCACCCAGATTTGGTGGCTATGCAAGTTCAAAGAACAATCAATGAATCTGTATGGCGAAGACAAACACTTTCACTTCAAGAAAAAGATCAAACTTACCAGTGTCTCACCGGAAACCCAATCGACGATTGCTGGCGATGCGACCCCAACTGGGAAACAAATCGGCAAAGGCTCGCCGACTGCGGAATCGGATTCGGAAGAGACGCCATGGGGGGCAAGGGCGGCCAATACTACATCGTCACGGACTCCTCCGATAAGGACCCGGCCAACCCCACCCCTGGCACTCTCCGGCACGCCGTGATCCAAGTGGAACCCCTCTGGATTATCTTCGCCGGAGACATGGCTATAAAACTCAAACACGAACTCATCGTAAGCAGTTTCAAAACCATCGATGGCCGGGGAGCGAAAGTCCAGATAACCGGCGGCGGCTGCATCACTCTTCAGTTCATCTCGAACGTAATAATCCACAACGTCTTCATCCACCATTGCGTACCCACCGGGAATTCAAACATTCGATCGAGTCCAACACACGTCGGGCATCGTGGCAGATCGGACGGCGACGGAATCTCAATCTACAGCTCGAGAAAACTCTGGATCGATCATTGCTCCCTCTCGTATTGTGCGGACGGGCTGATAGACGCTATAATGGGGTCAACCGGAATCACCATCTCGAACAGCTATTTCTCGCACCATAACGAGGTGATGCTTCTGGGGCACGACGATAGGCATGTACCAGACTCTGGTATGCAGGTGACCATCGCCTTCAACCACTTCGGCGAGGCGCTGGTGCAGCGTATGCCGAGGTGTAGACGCGGGTACATACACGTGGTCAACAATGATTTCACGGCGTGGGAGATGTACGCCATAGGAGGTAGTGCCAGTCCCACCATTAATAGCCAAGGGAATCGATACACAGCTCCGCTCGACCCTTACGCAAAGGAGGTAGTGACCAAGCGGGTGGATACAGACGAAAGAGAGTGGAGCGACTGGAACTGGAGGACGGAGGGGGACATAATGGTGAACGGAGCGTTCTTCGTGCCATCGGGACAAGGCCTGAGCCCTCAGTTCATGAAAGCCTCCAGCGTGGAGCCCAAGTCCGTCGCTCTCATCGACCAACTCACCCTCTACTCCGGCGTGCTCAAAAAGCCAGGG 1218 53.69 FLLTYLCSSAMAALNLTIPHQYPHPDLVAMQVQRTINESVWRRQTLSLQEKDQTYQCLTGNPIDDCWRCDPNWETNRQRLADCGIGFGRDAMGGKGGQYYIVTDSSDKDPANPTPGTLRHAVIQVEPLWIIFAGDMAIKLKHELIVSSFKTIDGRGAKVQITGGGCITLQFISNVIIHNVFIHHCVPTGNSNIRSSPTHVGHRGRSDGDGISIYSSRKLWIDHCSLSYCADGLIDAIMGSTGITISNSYFSHHNEVMLLGHDDRHVPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSASPTINSQGNRYTAPLDPYAKEVVTKRVDTDEREWSDWNWRTEGDIMVNGAFFVPSGQGLSPQFMKASSVEPKSVALIDQLTLYSGVLKKPG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 481433 482921 + BLOR12969 Blo04g00057 59085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00057 406 Pfam Pectate lyase 141 324 IPR002022 -
Blo04g00057 406 SMART amb_all 135 332 IPR002022 -
Blo04g00057 406 SUPERFAMILY Pectin lyase-like 51 379 IPR011050 -
Blo04g00057 406 PANTHER PECTATE LYASE 7 402 - -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Blo04g00057 406 PRINTS Pollen allergen Amb family signature 83 100 IPR018082 -
Blo04g00057 406 PANTHER PECTATE LYASE 18-RELATED 7 402 IPR045032 GO:0030570
Blo04g00057 406 Gene3D - 60 403 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00057 Blo-Chr4:481433 Blo12g00487 Blo-Chr12:22639241 0 dispersed
Blo13g00705 Blo-Chr13:29815337 Blo04g00057 Blo-Chr4:481433 1.91E-24 dispersed
Blo13g00704 Blo-Chr13:29814282 Blo04g00057 Blo-Chr4:481433 0 wgd
Blo04g00057 Blo-Chr4:481433 Blo04g00340 Blo-Chr4:2674877 2.66E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00057 K01728 - csv:101205739 687.952