Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00099 ATGATGGGGACGGAGGACGGGTCTGGAAGTACCGCAGCTCCATGCCAGGTTTCTGGCTCGCGGAAAATATTCTGGCGTTCAGCATCGTGGTCCACATCTCGTACCTTTCCTCATAACCCCGATACAGTGGAATTAGGAGTGGATTTGAATGGCAATAGTGCTAACAACAATGGAATAAGCAAAGGATTTCCTGCTCCTATAACCCCCAGATCTCAACAGAATAGCAAGGGAAGGCTATGTTTGCCGCCTTTGCGGCCCTTGTCGATTGCTCGGAGGAGCCTAGATGAGTGGCCAAAGGCAAGCTCGGACGACATTGGGGAGTGGCCATTGCCTTCTACTCCAAGCGGGACAGGGAATGCGGAAAGATTAAAGCTTGATTTGTCAACGATTCAGAAAGTTCCAGACAAGAATGGTGGGCTTCTGAAGAGGGATAAAATAGCTTTCTTTGACAAAGAGTGTTCAAAAGTGGAAGAACATGTTTATCTTGGTGGGGATGCTGTTGCACGAGATAGGGCTATTCTTCTGCAGAACGGAATCACTCACATTTTGAATTGTGTGGGATTCGTCTGCCCTGAATACTTTAAAGCGGATTTTACTTACAGAACTCTATGGTTGCAGGATAGTCCTTCTGAGGATATAACTAGTATTTTATATGATGTTTTTGACTACTTTGAGGATGTTAGAGAGCTAGGTGGAAGGGTGTTTGTTCATTGTTGCCGTGGGGTTTCTCGGTCCACATCGCTGGTGATTGCCTATCTAATGTGGAGAGAAGGTCAGAGCTTTGATGATGCATTTCGGTATGTCAAGGCAGCGAGAGGCATTGCTGATCCAAATATGGGTTTTGCTTGCCAGTTATTGCAGTGCCAAAAGAGAGTCCATGCGTTTCCTTTAAGTCCAAGCTCAGTACTGAGAATGTATAGAATTGCTCCACACTCCCCATATGACCCTTTGCATCTTGTGCCAAAAATGTTGAATGATCCTTCTCCTGCTGCTTTGGATTCAAGAGGTGCATTTATCATTCACACCCCATCTGCAATATATCTTTGGGTTGGCAAGAGTTGTGAGGCGATCATGGAAAGAGACGCGAGGGGAGCTGCTTCTCAGATTGTTCGATACGAGAAAGTGGGAGGGCCGATAACAGTGATCAAGGAAGAGAAAGAGCCAGCTTCTTTTTGGGATTCCTTTTCAAGCCTATTGCCTTTGATGTGTAAATCTGGCAATGGAGTGAATGTGGGGGAATCAGAGGTTGAGATTTTCCCAGGGGAGAGAAAGGTGGATTCATATAACGTTGATTATGAGATTTTCCAAAGAGCTATTTTGGGGGGGTTTGTACCTCCTCTTGCTTCATCAGATAATGAACATGAAACCCACCTTCCTGCCAGTGAAAGCAGTTGGAGCCTGTTGAGGAGGAAGTTTGCTTCTGCTCATATGAAAGAGTCTGTGTCAGCACCCAAAATAGCTCTTTCCCGGGTTTATTCAGATTCTTCGATACTTGCATTTTCATCTGCCAAGCCTCTGCCTTCTTCATCGTCATCATCACCTATTCGTCTCTCTCCTGGCTCAATCTCCTCTGATACATGCACGAGTTCTCAGGACTTTTCAGAAAGCTCCCGTGATTCTCCATCTGAATCTTTATCTGCATCTTCAACTTCGCCCAGCTTGTGCAACGCGTCCCTCTGCTCATTCAAAACGTCCCCTCGTCCGATGCCCAACACTTCAGAAGTTCCCGGTCCAATAATGGCTTCATCAATGAGAACTCAAACATCCCCTTTGAAAAAGTTGTCTCCTTCGCTTGCAGAACGCAGAGGTAGCTTCTCGAAGTTTCTTGAGCTGCCAAAGATGTCTGAAAGGACGAGGGCAACCTGTAACTACTCAAGTTTTCTTTCCAGTGAAGGATACGATGAAAAAGTTATGGCAAAAGAAGCTACTCGCCCATTTGAGGATTCATATAATGTAGGACATGCCATAGACCTTAGAGACAATGATGTAAATCAAGGTATTAGATTGTTTTCTCAGGCTCTAATTTCTTTCTTTTTTTCTTTGATTCTCTCGGTAGTGGCAAGTGGGAGTAATTTGGACAGAATTTCGGACATGGCTCCTAAAGTTGATGGTGCGAAAAAGTCTGATCCTAAAGCTCAAGCCTTGAAAACTGCAAAGGCAGTAAAATCTGGTCCAACCTTTAAGAAGAAAGCTAAGAAGATAAGGACTAAAGTCACATTTCATCGGCCGAAGACATTGAAGAAGGACAGGAACCCCAAGTATCCTCGCATTAGTGCACCCCCAAGAAACAAATTGGACCATTATCAAATTCTGAAGTATCCACTCACTACTGAGTCTGCCATGAAGAAAATTGAGGACAACAACACTCTGGTTTTCATTGTTGATATCCGTGCAGATAAGAAGAAGATCAAAGATGCAGTGAAAAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTGATCAGGCCTGATGGAACTAAGAAGGCCTATGTCAGGTTGACCCCAGATTATGACGCCTTAGACGTTGCGAACAAGATTGGAATTATCTAA 2553 44.42 MMGTEDGSGSTAAPCQVSGSRKIFWRSASWSTSRTFPHNPDTVELGVDLNGNSANNNGISKGFPAPITPRSQQNSKGRLCLPPLRPLSIARRSLDEWPKASSDDIGEWPLPSTPSGTGNAERLKLDLSTIQKVPDKNGGLLKRDKIAFFDKECSKVEEHVYLGGDAVARDRAILLQNGITHILNCVGFVCPEYFKADFTYRTLWLQDSPSEDITSILYDVFDYFEDVRELGGRVFVHCCRGVSRSTSLVIAYLMWREGQSFDDAFRYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSVLRMYRIAPHSPYDPLHLVPKMLNDPSPAALDSRGAFIIHTPSAIYLWVGKSCEAIMERDARGAASQIVRYEKVGGPITVIKEEKEPASFWDSFSSLLPLMCKSGNGVNVGESEVEIFPGERKVDSYNVDYEIFQRAILGGFVPPLASSDNEHETHLPASESSWSLLRRKFASAHMKESVSAPKIALSRVYSDSSILAFSSAKPLPSSSSSSPIRLSPGSISSDTCTSSQDFSESSRDSPSESLSASSTSPSLCNASLCSFKTSPRPMPNTSEVPGPIMASSMRTQTSPLKKLSPSLAERRGSFSKFLELPKMSERTRATCNYSSFLSSEGYDEKVMAKEATRPFEDSYNVGHAIDLRDNDVNQGIRLFSQALISFFFSLILSVVASGSNLDRISDMAPKVDGAKKSDPKAQALKTAKAVKSGPTFKKKAKKIRTKVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 855074 860106 + BLOR13011 Blo04g00099 59127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00099 850 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 147 293 IPR029021 -
Blo04g00099 850 Pfam Ribosomal protein L23 770 831 IPR013025 GO:0003735|GO:0005840|GO:0006412
Blo04g00099 850 SUPERFAMILY Actin depolymerizing proteins 299 401 - -
Blo04g00099 850 PANTHER MKPA PROTEIN 1 652 - -
Blo04g00099 850 ProSitePatterns Tyrosine specific protein phosphatases active site. 236 246 IPR016130 GO:0016311|GO:0016791
Blo04g00099 850 Gene3D Protein tyrosine phosphatase superfamily 138 294 IPR029021 -
Blo04g00099 850 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 211 272 IPR000387 GO:0016311|GO:0016791
Blo04g00099 850 Pfam Ribosomal protein L23, N-terminal domain 711 760 IPR005633 -
Blo04g00099 850 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 767 843 IPR012678 GO:0003735|GO:0005840|GO:0006412
Blo04g00099 850 MobiDBLite consensus disorder prediction 56 78 - -
Blo04g00099 850 MobiDBLite consensus disorder prediction 502 554 - -
Blo04g00099 850 MobiDBLite consensus disorder prediction 56 79 - -
Blo04g00099 850 ProSiteProfiles Dual specificity protein phosphatase domain profile. 152 294 IPR020422 GO:0006470|GO:0008138
Blo04g00099 850 Gene3D Severin 303 398 IPR029006 -
Blo04g00099 850 CDD DSP 153 287 - -
Blo04g00099 850 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 652 - -
Blo04g00099 850 Pfam Dual specificity phosphatase, catalytic domain 160 290 IPR000340 GO:0008138|GO:0016311
Blo04g00099 850 ProSitePatterns Ribosomal protein L23 signature. 828 843 IPR001014 -
Blo04g00099 850 Hamap 50S ribosomal protein L23 [rplW]. 770 850 IPR013025 GO:0003735|GO:0005840|GO:0006412
Blo04g00099 850 Gene3D - 731 850 IPR012677 -
Blo04g00099 850 SMART dsp_5 152 291 IPR020422 GO:0006470|GO:0008138
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00099 Blo13g00894 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00099 Blo-Chr4:855074 Blo13g01045 Blo-Chr13:32771159 1.48E-78 dispersed
Blo06g01157 Blo-Chr6:34983477 Blo04g00099 Blo-Chr4:855074 8.72E-82 transposed
Blo15g00191 Blo-Chr15:1972510 Blo04g00099 Blo-Chr4:855074 7.58E-78 transposed
Blo13g00894 Blo-Chr13:31492229 Blo04g00099 Blo-Chr4:855074 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00099 - - cmo:103500189 880.167