Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00108 ATGGCTGATGCTGAGGACATTCAACCTCTTGTATGTGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCAGGAGACGATGCTCCTCGAGCTGTGTTTCCTAGCATTGTAGGCCGTCCTCGCCACACTGGTGTGATGGTTGGTATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCAAAACGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGAATTGTCAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGAGCTCCGAGTTGCCCCAGAGGAGCACCCTGTGCTCCTAACTGAGGCCCCTCTTAACCCAAAGGCCAACCGTGAGAAAATGACGCAAATCATGTTTGAAACCTTCAATACTCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTCTATGCCAGTGGCCGTACGACTGGTATTGTGCTGGATTCAGGTGATGGTGTCAGTCATACAGTTCCTATCTATGAAGGCTATGCTCTTCCTCATGCCATTCTTCGTCTTGACTTGGCTGGGCGTGATCTCACTGATAACCTGATGAAAATTCTCACTGAGCGTGGGTACTCATTTACCACCACAGCTGAGCGTGAAATTGTAAGGGATATGAAGGAAAAGTTGGCATACATTGCTCTTGACTATGAGCAGGAAATGGAAACTGCCAAGACTAGTTCATCTGTTGAGAAGAGCTATGAGTTGCCTGATGGACAGGTCATCACCATTGGTGCTGAACGATTCCGATGCCCAGAGGTTCTTTTCCAGCCATCAATGATTGGAATGGAAGCAGCGGGCATTCATGAAACTACCTACAATTCCATCATGAAGTGTGATGTAGATATCAGGAAAGACCTGTATGGAAACATAGTCCTTTCTGGTGGTTCAACCATGTTCCCAGGAATTGCTGATAGAATGAGTAAGGAAATTTCGGCTCTCGCCCCCAGCAGCATGAAGATTAAGGTTGTGGCACCCCCAGAGAGAAAATACAGTGTCTGGATTGGAGGCTCCATATTGGCTTCTTTGAGCACCTTCCAGCAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCATAGGAAGTGCTTCTAA 1134 46.21 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 922039 923686 + BLOR13020 Blo04g00108 59136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00108 377 Pfam Actin 5 377 IPR004000 -
Blo04g00108 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Blo04g00108 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Blo04g00108 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Blo04g00108 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Blo04g00108 377 SMART actin_3 7 377 IPR004000 -
Blo04g00108 377 Gene3D - 140 340 - -
Blo04g00108 377 Gene3D - 10 371 - -
Blo04g00108 377 PANTHER ACTIN 1 376 IPR004000 -
Blo04g00108 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Blo04g00108 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Blo04g00108 377 PANTHER ACTIN-97 1 376 - -
Blo04g00108 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Blo04g00108 377 PRINTS Actin signature 51 62 IPR004000 -
Blo04g00108 377 PRINTS Actin signature 238 254 IPR004000 -
Blo04g00108 377 PRINTS Actin signature 63 85 IPR004000 -
Blo04g00108 377 PRINTS Actin signature 142 161 IPR004000 -
Blo04g00108 377 PRINTS Actin signature 28 37 IPR004000 -
Blo04g00108 377 PRINTS Actin signature 117 130 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00108 Blo-Chr4:922039 Blo09g00434 Blo-Chr9:15322752 0 dispersed
Blo13g00761 Blo-Chr13:30365111 Blo04g00108 Blo-Chr4:922039 0 dispersed
Blo04g00108 Blo-Chr4:922039 Blo04g00110 Blo-Chr4:928073 2.45E-77 proximal
Blo07g00639 Blo-Chr7:20766735 Blo04g00108 Blo-Chr4:922039 1.13E-57 transposed
Blo13g01078 Blo-Chr13:32931045 Blo04g00108 Blo-Chr4:922039 0 wgd
Blo14g00119 Blo-Chr14:859346 Blo04g00108 Blo-Chr4:922039 0 wgd
Blo04g00108 Blo-Chr4:922039 Blo04g00277 Blo-Chr4:2106707 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00108 K10355 - csv:101220611 755.747