Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00110 ATGATTCAGAAATTCGGAGGGGGAAGGCAACCCACAGGTACTCCCTCACTCGCCTGGTCTTCCCTCCTCGTCGTCGTCTCTCTCCTCGCCGGCGCTTCCGTCGTCCACAACATCTGCAAACCCAATCTAGTGACTGTTGTTTCGCTCAATGGTAAAGAAGTTGTTAAGGGTAGCCGTCAGATCAACGATTCCGCTACGGTGGCCGATCTGCTGGAGGCAATTCATGAGCGAACTAAAAAGTTCTACCCTTCAAGGCAGCGGCTTACCCTCCCGCTCCAACTGGGATCAAAAGAGAGGCCAATTGTTCTTAACTACAAGAAACTTCTCAAAGAGTACTGCAGCAACGTCTCCAAAAGCATAACTGTTGTTTTGAAGGATCTAGGTCCGCAAGTTTCATATCGAACACTTTTCTTCTGGGAGTACTTGGGTCCACTAATCCTCTACCCCATTTTTTACTACTTTCCGTCGATCAGTCATGCAACCTCCCCTCTTACCAATGTGTTTAGAAACTGTGCTTATTATTGGAGCTTTGGCTGTTACATTGCTTATTATGTGAATCATCCCCTAATAGGCTTTGGATTGGGCTTAATTTGTCAAATTGAGAACTTTTACTGCCATATTTTACTGAGAAATCTTTGTAGCCCCGAAGGCAATGGAGGGTACCAAATCCGGCTTGGGTTTCTCTTCAATATTGTGACGTGTGCAAATTATACGATTGAGATATACCAGTGGGTTGGATTTAACATTGTGACACCAACTGTTGCCAGTTATGTATTTCTGGTGGTGGCTGCTCTCATCATGACCAATTGGGCTCTTGCAAAACCCCGCCGACTCAAGAAGATGGCTGATACTGAGGACATTCAACCTCTTGTATGTGACAATGGCATAGGAATGGTTAAGGCTGGATTTGCAGGAGACAATGCTCCTCGAGCTGTGTTTCCTAGCATTGTAGGCCGCCCTCGCCACACTGGTGTGATGGTTGGTATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCAAAACGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGAGCTCCGAGTTGGCCCAGAGGAGCACCCTGTGCTCCTAACTGAGGCCCCTCATAACCCAAAGGCCAACCCTGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGTTGGCATACATTGCTCTTGATTATGAGCAGGAAATGGAAACTGCCAAGACTAGCTCATCTGTTCAGAAGAGCTATAAGTTGCCTGATGGACAGGTCATCACCATTGGCGCTGAACGATGCCCAGAGTTTCTTTTCCAGCCATCAATGATCGGAATGGAAGCAGCGGGCATTCATGAAACTACCTACAATTCCATCATGAAGTGTGATGTAGATATCGGGAAAGACTTGTATGGAAACATAGTCCTTTCTGGTGGTTCAACCATGTTCCCAGGAATTGCTGATGGAATGAGCAAGGAAATTTCGGCTCTCGCCCCCAGCAGCATGAAGATTAAGGTTGTGGCACCCCCAGAGAGAAAATACACGTGGATTGCCAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCATAGGAAGTGCTTCTAA 1653 46.16 MIQKFGGGRQPTGTPSLAWSSLLVVVSLLAGASVVHNICKPNLVTVVSLNGKEVVKGSRQINDSATVADLLEAIHERTKKFYPSRQRLTLPLQLGSKERPIVLNYKKLLKEYCSNVSKSITVVLKDLGPQVSYRTLFFWEYLGPLILYPIFYYFPSISHATSPLTNVFRNCAYYWSFGCYIAYYVNHPLIGFGLGLICQIENFYCHILLRNLCSPEGNGGYQIRLGFLFNIVTCANYTIEIYQWVGFNIVTPTVASYVFLVVAALIMTNWALAKPRRLKKMADTEDIQPLVCDNGIGMVKAGFAGDNAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVGPEEHPVLLTEAPHNPKANPEREIVRDMKEKLAYIALDYEQEMETAKTSSSVQKSYKLPDGQVITIGAERCPEFLFQPSMIGMEAAGIHETTYNSIMKCDVDIGKDLYGNIVLSGGSTMFPGIADGMSKEISALAPSSMKIKVVAPPERKYTWIAKAEYDESGPSIVHRKCF 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 928073 932477 + BLOR13022 Blo04g00110 59138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00110 550 Gene3D Actin; Chain A, domain 2 316 353 - -
Blo04g00110 550 PANTHER ACTIN 3 281 399 - -
Blo04g00110 550 PANTHER ACTIN 399 533 IPR004000 -
Blo04g00110 550 PANTHER ACTIN 281 399 IPR004000 -
Blo04g00110 550 SMART actin_3 287 550 IPR004000 -
Blo04g00110 550 Pfam Domain of unknown function (DUF4516) 11 43 IPR027858 GO:0034551
Blo04g00110 550 CDD Ubl_TECR_like 44 127 - -
Blo04g00110 550 Pfam Actin 285 397 IPR004000 -
Blo04g00110 550 Pfam Actin 399 550 IPR004000 -
Blo04g00110 550 SUPERFAMILY Actin-like ATPase domain 393 550 IPR043129 -
Blo04g00110 550 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 162 281 IPR001104 GO:0006629|GO:0016627
Blo04g00110 550 ProSitePatterns Actins signature 1. 335 345 IPR004001 -
Blo04g00110 550 Gene3D - 284 548 - -
Blo04g00110 550 ProSitePatterns Actins signature 2. 531 539 IPR004001 -
Blo04g00110 550 PRINTS Actin signature 331 342 IPR004000 -
Blo04g00110 550 PRINTS Actin signature 343 365 IPR004000 -
Blo04g00110 550 PRINTS Actin signature 308 317 IPR004000 -
Blo04g00110 550 PANTHER ACTIN 3 399 533 - -
Blo04g00110 550 CDD NBD_sugar-kinase_HSP70_actin 290 494 - -
Blo04g00110 550 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 191 272 IPR001104 GO:0006629|GO:0016627
Blo04g00110 550 SUPERFAMILY Actin-like ATPase domain 285 400 IPR043129 -
Blo04g00110 550 Gene3D - 422 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00110 Blo-Chr4:928073 Blo13g00886 Blo-Chr13:31432644 4.04E-77 dispersed
Blo04g00106 Blo-Chr4:913059 Blo04g00110 Blo-Chr4:928073 8.22E-143 proximal
Blo04g00108 Blo-Chr4:922039 Blo04g00110 Blo-Chr4:928073 2.45E-77 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00110 K10258 - smm:Smp_161930 438.728