Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00116 ATGAGTTTTGTTTTTCGTGGAACAAGAGCTCCAGATATTGAAAATGGTTTATCTGGGTATACCTCAGAGCGGCGAGCCTTGCGTGTTCACACTGCACGTCCTGTTAATTCCAACTCCCTTGCTTTTCTTGTCACAGTTTTGTTGCTATTCATGATACTTAACTCACATCAGATGTCTCCCAATTTTCTGCTTTGGCTTGTACTTGGTGTCTTTCTGATGGCCACAACCTTGAGAATGTATGCAACTTGTCAACAACTTCAAGCTCAGGCCCAAGCTCATGCTATGGCAGCCAGTGGCATTCTTGGTCACACTGAACTGCGGTTGCATATGCCACATTCTATTGCACTCGCGACGAGGGGCCGTTTGCAGGGCCTTAGACTCCAGCTTGCAGTACTTGACAGGGAATTTGATGATTTAGATTATGAAACCTTGAGAGCATTGGATTCCGACAATGCTCCATCCGCTCTATCAATGAGCGAAGAAGAAATAAACACTCTTCCCGTTCACAAGTACAAGATTGCTGGTTCTCAAAATGGAAATTCATTGGTTCAACAAGGCTCATCTTCTACATCTGTTGAGAAAAAACAAGACTCTACTAATCCAGTGGGTAGTACAAATGGCACAGAAGATGAACTAACCTGCAGTGTTTGCTTGGAGCAAGTTAATGCTGGAGAACTCATTCGTAGTTTGCCATGCATGCATCAGTTCCATGTTACTTGCATTGATCCGTGGTTGCGGCAACAGGGGACGTGCCCGGTCTATAAGAACAACCAGGGACCAGATCTACAAAGGCTGCTCCGGCGGAGCCGCCATGGTTGGACGATTACTTTGCTACCTGGACGATTAGTTTGCTTGGCTTCTAGATTTTGCGACGTTGAACAATCATTTGAAGCTAGCGAGTGCCACCCGGAGATGGATTGTTTCATGTCATCGATTGACATGCACACGCAGTATGCGTACGAACAATTGATGCCGGATTCAATTGAAATTGTCATGGCACCTGTGGACAAAAAACGCCAACACGGCATATTTCAAGTCTCCCGCCCTGTAGGGTGGTCGGTGATGTCCAAATGCAATGGGCAGGGCTTCCATCTCCACAATCCGTACGATCGAGATGAACTCTACGAGGAGTGCACGAGTGTGGAGATGAGCTCCGATTTGCACTTCAACATCATCGACATCCGGGACGCAGAGCCTTCCATATTTGATGAGGCACCACCTGTTCAGCCACGCTCAGAGGCCCCAGTTCAGCCACTCCCAGAGGCCCCACCTGTTCAGCCACTCCCAGAGGCCCCACCTGTTCAGCCACTTGCAACGGTACCACCTGTAACGTATTCTAGATATACAAGAAACGCAGGACGTGCAAGAGGTGCAGCACGTGAAAGAGTTGAAAAAATAGAAAAAACGTTGAACAAGTGGCTCAATTGA 1428 47.48 MSFVFRGTRAPDIENGLSGYTSERRALRVHTARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAMAASGILGHTELRLHMPHSIALATRGRLQGLRLQLAVLDREFDDLDYETLRALDSDNAPSALSMSEEEINTLPVHKYKIAGSQNGNSLVQQGSSSTSVEKKQDSTNPVGSTNGTEDELTCSVCLEQVNAGELIRSLPCMHQFHVTCIDPWLRQQGTCPVYKNNQGPDLQRLLRRSRHGWTITLLPGRLVCLASRFCDVEQSFEASECHPEMDCFMSSIDMHTQYAYEQLMPDSIEIVMAPVDKKRQHGIFQVSRPVGWSVMSKCNGQGFHLHNPYDRDELYEECTSVEMSSDLHFNIIDIRDAEPSIFDEAPPVQPRSEAPVQPLPEAPPVQPLPEAPPVQPLATVPPVTYSRYTRNAGRARGAARERVEKIEKTLNKWLN 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 963120 976835 - BLOR13028 Blo04g00116 59144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00116 475 CDD RING-H2_PA-TM-RING 213 253 - -
Blo04g00116 475 MobiDBLite consensus disorder prediction 403 442 - -
Blo04g00116 475 MobiDBLite consensus disorder prediction 179 209 - -
Blo04g00116 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 260 IPR013083 -
Blo04g00116 475 Gene3D Cytidine Deaminase, domain 2 300 395 - -
Blo04g00116 475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 259 - -
Blo04g00116 475 SUPERFAMILY RING/U-box 209 253 - -
Blo04g00116 475 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Blo04g00116 475 SMART ring_2 214 254 IPR001841 -
Blo04g00116 475 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Blo04g00116 475 MobiDBLite consensus disorder prediction 411 439 - -
Blo04g00116 475 Pfam Ring finger domain 213 253 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00116 Blo13g00883 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00116 Blo-Chr4:963120 Blo12g00356 Blo-Chr12:19711381 1.53E-108 dispersed
Blo19g00276 Blo-Chr19:16591871 Blo04g00116 Blo-Chr4:963120 4.98E-26 transposed
Blo13g00883 Blo-Chr13:31363028 Blo04g00116 Blo-Chr4:963120 2.74E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00116 K16283 - csv:101216306 411.764