Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo04g00142 | ATGGAGGAAGGGTTGTCAGGCTTTTATATTAAAACTTCAAGTGTTCGGGGAGCCAGCGGCGGCGGAGTTGTCGGGCTCAACGGCGGTGGGACGGGTGCCAAATGTGGGAGGTGGAACCCCACGACCGAACAGGTTAAGGTCTTGACGGAGCTTTTCCGGACTGGACTTCGAACTCCGAGCACCGATCAGATTCAGAAAATCTCGACGCAGCTGAGCCTTTACGGGAAGATCGAGAGCAAGAATGTTTTCTACTGGTTTCAGAATCATAAAGCTAGGGAGAGACAGAAGCGCCGCAAAGTTTCCAACACTTCTGATCAGAGAGATTTTCTTCGTAAGGACGACCAAATCTTTTCTCCAAATCAGATAAAACAAGTTTCAGAGCCAGAAAGAGTGATGGAAACTCTGCAACTTTTCCCAACAAACGCCATGGAAGAAGCAACTCCAGTTCATCGTAAGCTCAGATCACCAGTACATGCAAAACAGTACAAGGAAACTGCATCTTTTACGTACACAATCGAAACAGAAATGGGGACTCATCCGCCATTGGACCTGCGTTTAAGCTTTACGTAG | 570 | 47.72 | MEEGLSGFYIKTSSVRGASGGGVVGLNGGGTGAKCGRWNPTTEQVKVLTELFRTGLRTPSTDQIQKISTQLSLYGKIESKNVFYWFQNHKARERQKRRKVSNTSDQRDFLRKDDQIFSPNQIKQVSEPERVMETLQLFPTNAMEEATPVHRKLRSPVHAKQYKETASFTYTIETEMGTHPPLDLRLSFT | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1178659 | 1179323 | - | BLOR13054 | Blo04g00142 | 59170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo04g00142 | 189 | Pfam | Homeodomain | 35 | 95 | IPR001356 | GO:0003677 | |
| Blo04g00142 | 189 | MobiDBLite | consensus disorder prediction | 98 | 113 | - | - | |
| Blo04g00142 | 189 | SMART | HOX_1 | 33 | 100 | IPR001356 | GO:0003677 | |
| Blo04g00142 | 189 | MobiDBLite | consensus disorder prediction | 94 | 113 | - | - | |
| Blo04g00142 | 189 | CDD | homeodomain | 37 | 97 | IPR001356 | GO:0003677 | |
| Blo04g00142 | 189 | ProSiteProfiles | 'Homeobox' domain profile. | 31 | 96 | IPR001356 | GO:0003677 | |
| Blo04g00142 | 189 | PANTHER | WUSCHEL-RELATED HOMEOBOX 7 | 1 | 177 | - | - | |
| Blo04g00142 | 189 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 1 | 177 | IPR044555 | GO:0003700|GO:0099402 | |
| Blo04g00142 | 189 | SUPERFAMILY | Homeodomain-like | 36 | 99 | IPR009057 | - | |
| Blo04g00142 | 189 | Gene3D | - | 34 | 102 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo04g00142 | Blo-Chr4:1178659 | Blo13g00175 | Blo-Chr13:6520191 | 7.33E-28 | dispersed | |
| Blo04g00142 | Blo-Chr4:1178659 | Blo13g01096 | Blo-Chr13:33107554 | 6.21E-25 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 12213 | PF00046 | Homeodomain | 2.80E-18 | CL0123 | Blo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo04g00142 | - | - | zju:107413812 | 218.779 |