Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00142 ATGGAGGAAGGGTTGTCAGGCTTTTATATTAAAACTTCAAGTGTTCGGGGAGCCAGCGGCGGCGGAGTTGTCGGGCTCAACGGCGGTGGGACGGGTGCCAAATGTGGGAGGTGGAACCCCACGACCGAACAGGTTAAGGTCTTGACGGAGCTTTTCCGGACTGGACTTCGAACTCCGAGCACCGATCAGATTCAGAAAATCTCGACGCAGCTGAGCCTTTACGGGAAGATCGAGAGCAAGAATGTTTTCTACTGGTTTCAGAATCATAAAGCTAGGGAGAGACAGAAGCGCCGCAAAGTTTCCAACACTTCTGATCAGAGAGATTTTCTTCGTAAGGACGACCAAATCTTTTCTCCAAATCAGATAAAACAAGTTTCAGAGCCAGAAAGAGTGATGGAAACTCTGCAACTTTTCCCAACAAACGCCATGGAAGAAGCAACTCCAGTTCATCGTAAGCTCAGATCACCAGTACATGCAAAACAGTACAAGGAAACTGCATCTTTTACGTACACAATCGAAACAGAAATGGGGACTCATCCGCCATTGGACCTGCGTTTAAGCTTTACGTAG 570 47.72 MEEGLSGFYIKTSSVRGASGGGVVGLNGGGTGAKCGRWNPTTEQVKVLTELFRTGLRTPSTDQIQKISTQLSLYGKIESKNVFYWFQNHKARERQKRRKVSNTSDQRDFLRKDDQIFSPNQIKQVSEPERVMETLQLFPTNAMEEATPVHRKLRSPVHAKQYKETASFTYTIETEMGTHPPLDLRLSFT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1178659 1179323 - BLOR13054 Blo04g00142 59170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00142 189 Pfam Homeodomain 35 95 IPR001356 GO:0003677
Blo04g00142 189 MobiDBLite consensus disorder prediction 98 113 - -
Blo04g00142 189 SMART HOX_1 33 100 IPR001356 GO:0003677
Blo04g00142 189 MobiDBLite consensus disorder prediction 94 113 - -
Blo04g00142 189 CDD homeodomain 37 97 IPR001356 GO:0003677
Blo04g00142 189 ProSiteProfiles 'Homeobox' domain profile. 31 96 IPR001356 GO:0003677
Blo04g00142 189 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 177 - -
Blo04g00142 189 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 177 IPR044555 GO:0003700|GO:0099402
Blo04g00142 189 SUPERFAMILY Homeodomain-like 36 99 IPR009057 -
Blo04g00142 189 Gene3D - 34 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00142 - - - zju:107413812 218.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00142 Blo-Chr4:1178659 Blo13g00175 Blo-Chr13:6520191 7.33E-28 dispersed
Blo04g00142 Blo-Chr4:1178659 Blo13g01096 Blo-Chr13:33107554 6.21E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g442 Blo04g00142 . . . . . . . . . . . . . Sed11g2169 Cpe13g01073 . Bhi04g02335 Tan11g0257 Cmetu03g1117 . Hepe02g3328 . Lcy10g2207 . . . . . . . Cone1ag1228 Cone5ag0215 . . Lsi03g00319 Csa06g00167 . . . . . . . . . . . Cmo04g03039 Cmo15g00135 Cma04g02915 Cma15g00124 Car04g02803 Car15g00135 . Cpe01g02525 . . . . . . . Cla11g00606 . . . . . . . . Chy03g00173 Cme03g00234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008920 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12213 PF00046 Homeodomain 2.80E-18 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00142 Blo_Chr04 FPKM 5.016591 5.04555 30.316042 28.485655 5.133105 4.309368 4.361514 26.45215 28.241127 28.584627