Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00155 ATGTACGGTGATTTGAGTATTAAACTTGGTTCTTTAAATTTTATCATGGAGAATGAAATTCAGAAGCAAAACAAGACAATTTTCTCTGGTGCTTCCATTTTACTTGAATTAGCAGCCTCCGACGATCTTGATGCCTTCAGGAGAGAAGTTGAAGAGAAAGGACTGGACATCAATGAGGTGGCCTCTTGGTATGGCAGGAATATTGGGTCGAGAAAGATGGGTTTCGAGGAAAGGACTCCACTTTTAATTGCAGCCATGTTTGCAAGTGCGAAGATCATGGAGTACATAATCGAAACTGGCAAGGTCGATGTTAATAGGGCTTATGGTTCGGATAAGGCCACTGCCCTCCACTGTGCTGCTGCTGGTGGATCAAGCGATTCAACAGAGGTTATCAAACTCTTACTCGATGCTTCTGCAGATGCCAATTGTGTGGATTCTAACGGCAACAAGCCTGTTGATTTGATCGCCCGGTCAATGAAATCGCTTCCCAATTCAAGGAGGAAGGCAATGGAGATGTTGCTCAACGGTGATTACTCGAGTGGTGAAGGTGCTCAGAGCATTAAGCAAATGGAAGATCAGCAAAAGCTCACAGGGTCGATGGTAGTGAAAGACGAGATTGAGAGGAAAGAATATCCTCTTGATGTTTCCTTGCCTGACATAAACATTGGGATTTATGGAACTGATGAGTTTAGAATGTATAGTTTTAAGGTGAAGCCGTGCTCCAGGGCCTACACCCACGATTGGACCGAATGCCCTTTTGCTCATCCAGGCGAGAATGCTAGGCGACGGGATCCTAAAAAGTATCCCTATAGCTGTGTCCCATGCCCTGAGTTCCGAAAAGGGGCTTGCCAAAAGGGTGAGGCCTGTGAATATGCGCATGGAGTCTTTGAATCATGGCTTCACCCTGCTCAATACAGGACCAGGCTTTGCAAGGACGTGATCGGATGTGCAAGGAAGGTATGCTTTTTCGCCCACAAACCTGAAGAATTACGACCCGTCTATGCCTCCACAGGCTCGGCCTTGCCATCACCTCGCTCACACTCTGTCAGCGGCTCAGAAATGGGGGCTTTGAGCCCATTAGCTCTTGGTTCTTCGACTTTATCTTTGTCTGTTCCGGCTACATCAACACCGCCCATGTCTCCTTTGGCATCCGTGTCATCACCCACGAGTGCGAGTTTGTGGCAAAACAAAGTCAGCCTCACACCTCCTACTTTGCAGTTGCCGGGTAGTAGACTGAAGACTTCTTCAAGTGCTAGAGATTTAGATTTCGAAATGGAATTGCTCGGCTTGGAAAATCGAACCAATCAACAGCAACAATATCAGCGTTTAGTTGATGAGATATCTCGTCTCTCCTCTCCAACTTATTGGAACAATGATTTTAGAAGTGGGGAATTGAAACAGATAAACTACGGTGATATTTTGGGATCTCTAGATTCTCCAATGCTGTCTCAGCTTCAGGGTCTCTCACAAAAACTATCGACGCCGACTCAATTGCAAACAAGGCCTCAAACAAACCAAGGAGTGAATCAACTTCGTTCAAGTGACCCACCCAAGCTCTCCTCTTCACCAGCCCGGAAACCTTTACCGTTCGGGCTTGACTCATCGGCTGCAGTGGCATCTGCAGTTATGAACTCCAGGTCATCCGCCTTTGCAAAGCGGAGCCAGAGTTTCATCGATCGTGCAGCACCAGCCCACGTTTCCTGCCATACAGCCTCTTCAAATTTGGCATCATGGGGCTCACCAGATGGGAAATTAGATTGGAGTGTTCAAGGAGACGATCTAAACAAGCTGAAAAAGTCAGCTTCCTTCGGGTTCAGAGCCAGAGCCACTGGCACGCCATCTGCTCCTGATGAGCCAGACGTGTCCTGGGTTAACTCATTAGTTAAGGATGTTCCTTCGGAGAAATCTGGGTTGTTTTATGCCGATAAGTCAGCTCACAGTCTTGGGAAGAAGTCTAACGAGTTTCTCCCATCTTGGGTTGAGCAGCTATACATAGAACAGGAGCAGATGGTGGCATAG 2019 47.15 MYGDLSIKLGSLNFIMENEIQKQNKTIFSGASILLELAASDDLDAFRREVEEKGLDINEVASWYGRNIGSRKMGFEERTPLLIAAMFASAKIMEYIIETGKVDVNRAYGSDKATALHCAAAGGSSDSTEVIKLLLDASADANCVDSNGNKPVDLIARSMKSLPNSRRKAMEMLLNGDYSSGEGAQSIKQMEDQQKLTGSMVVKDEIERKEYPLDVSLPDINIGIYGTDEFRMYSFKVKPCSRAYTHDWTECPFAHPGENARRRDPKKYPYSCVPCPEFRKGACQKGEACEYAHGVFESWLHPAQYRTRLCKDVIGCARKVCFFAHKPEELRPVYASTGSALPSPRSHSVSGSEMGALSPLALGSSTLSLSVPATSTPPMSPLASVSSPTSASLWQNKVSLTPPTLQLPGSRLKTSSSARDLDFEMELLGLENRTNQQQQYQRLVDEISRLSSPTYWNNDFRSGELKQINYGDILGSLDSPMLSQLQGLSQKLSTPTQLQTRPQTNQGVNQLRSSDPPKLSSSPARKPLPFGLDSSAAVASAVMNSRSSAFAKRSQSFIDRAAPAHVSCHTASSNLASWGSPDGKLDWSVQGDDLNKLKKSASFGFRARATGTPSAPDEPDVSWVNSLVKDVPSEKSGLFYADKSAHSLGKKSNEFLPSWVEQLYIEQEQMVA 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1270802 1272820 + BLOR13067 Blo04g00155 59183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00155 672 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 671 - -
Blo04g00155 672 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Blo04g00155 672 SMART ANK_2a 29 59 IPR002110 GO:0005515
Blo04g00155 672 SMART ANK_2a 76 106 IPR002110 GO:0005515
Blo04g00155 672 SMART ANK_2a 111 143 IPR002110 GO:0005515
Blo04g00155 672 MobiDBLite consensus disorder prediction 489 527 - -
Blo04g00155 672 Gene3D - 16 176 IPR036770 -
Blo04g00155 672 MobiDBLite consensus disorder prediction 489 520 - -
Blo04g00155 672 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Blo04g00155 672 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Blo04g00155 672 SUPERFAMILY Ankyrin repeat 28 157 IPR036770 -
Blo04g00155 672 Pfam Ankyrin repeats (3 copies) 69 144 IPR002110 GO:0005515
Blo04g00155 672 PANTHER UNKEMPT FAMILY MEMBER 18 671 IPR045234 -
Blo04g00155 672 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Blo04g00155 672 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Blo04g00155 672 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Blo04g00155 672 Gene3D - 270 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00155 Blo-Chr4:1270802 Blo13g01039 Blo-Chr13:32736790 0 dispersed
Blo13g00857 Blo-Chr13:31160361 Blo04g00155 Blo-Chr4:1270802 0 wgd
Blo04g00155 Blo-Chr4:1270802 Blo04g00230 Blo-Chr4:1804209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12215 PF12796 Ank_2 4.50E-07 CL0465 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00155 - - jre:109007162 879.396