Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00162 AAATGCAAGGGCTGTAGCTGTTCGTCATTAATGGCTTCCCCGATGTTTTTGCCCATCGGATCTTTGCTAGAATCACTGATTCAACTATCAAATGATGTTGCTTCCACAGAAAAGATAATCTTCTTGCAGGTTAGAAATATCTCAATCACGAGGAGGAAAATCAAGCTTCTTTCTTTTCTGTTTGAAGAGATTCAAGAAGCAAATAGTCTGCTTCCTCTATCTTCGATTCTGTGTCTATCTGAGCTCTTTTCTGTGATTCAAAAAGTCAAGTGTCTGATCCAAGCTTGCACAGAAGGAAGCTCTCTTTGGTGCCTTCTTCAGACGGAGCCCATCTCACATGAGTTTTATGTGCTTGCAAAGGAAATGTCGAGGGCACTGGATATATTACCTCTGAGCTTGCTCAAGATAACAGCGGATATTAGAGAGCAAGTCGAGCTTCTACTGAATCAAGCAAGGCGGGTTGAGTTGTTCATTGACCCTCAAGAACTTCGAAGAAGAGAAGAGCTTCTTCAAGTAATGACCAAGAATAATGAGAAGAAAACCAGAATCAAAGAATCCCTAGATCTTGGAAAAGTGGAAGAGCTTTTTAGCAGAGCTGGCTTGAAGAGTTCGTTGGATTATGAAGGTGAAATTTCAAAACTAGAGGCTGAAGCTCTAAAGCAAGCTGGCAGAGGTGGACTCATAGTAGTATCCAATATAAGCAATCTCATTTCCCTTGTCTTATATGCCAAGTCCATGATATTCAATGATGAAGAATATCTAAAAGCAGGAGAAGACTTGAAGCAGCAATCTGAATCCTCAAATAAGACATTTGTCAAATCTGAATCCTCTAAATTCTTGATCCCGATTCCAGACGAGTACCGCTGCCCCATATCACTAGACTTGATGAAAGATCCTGTGATTATAGCATCCGGTCAGACTTATGATCGGAATTCAATCGCCAAATGGATTGACTCAGGGCACCATGTTTGTCCGAAGAGCAGTCAGAGGCTAATTCACTTGGCTCTTATACCCAATTATGCATTGAAGAGTTTGATCCAACAATGGTGCCAGGAAAACAATGTCTTATTAAGTGAATCTTCAGCATCATCAATCCCTCACTTAGAGAGAAGCAACAACAGAAGAGATCTATCTAATAATGCTGTCCATCACAATTCTGCCACAAAAGCCGCAGCTGATTCTGTTAAAATGACATCCGAATTTTTAGTGGGAAAACTTGCAACAGGATCATCAGAAATCCAAAGGCAGGCAGCATATGAGCTCCGATTACTTGCAAAAGCAGGCATGGATAATAGAAGGATCATTGCTGAGGCAGGTGCTATTCCATTTTTAGTGACATTAGTGAGTTCTAATGATCCCAGACTACAAGAAAATGCTGTCACTGCCTTGCTCAACCTTTCTATCTTCAACAAAAACAAGACTTTAATAATTGCAGCCGGGGCAATTGACAATATAGTAGATGTTTTGGAATCTGGAAAAACCATGGAAGCAAGAGAAAATGCAGCAGCCACAATTTTTAGCCTATCCAAGGTTGATGAATCTAAGGTAAGTATCGGTCAGCTACCCAGGGCAGTTTCAGGGTTGGTAAGGCTCCTGAAAGAAGGCACTTCAGCTGGAAAAAGAGATGCTGCAACTGCACTTTACAGCTTAGCACTTTATAGTGCAAACAAGGCGAGTGTTGTAGCTGCAGGAGCTGTGCCATTGCTTGTTAACTTGATTACCGATGATAGAGCAGGTATAACAGATGATGCCTTGCAAGTGCTTTCTCTCATTTTAGGCTGCTCAGAAGGCCTGGAGGAGATGCAAAAAAGTCGAGCTCTAATACCTCTTCTCATTGATCTTTTGAGATTTGGGTCTGCAAAAGGCAAAGAAAGTTCTATGACTCTTCTGATGGGGCTGTGTAAAGATAGAGCAGAGGAAGTTGCCAGGCGCTTGCTAATGAATCCTCAGAGTATTCCATCTCTGCAGAGTATAGCATCCACTGGATCTTTAAAGGCTCGAAGAAAAGCCGATGCATTACTCAGACTGCTGAATAGGTTCTGCTCTAATTCTCATAATCTC 2061 41.63 KCKGCSCSSLMASPMFLPIGSLLESLIQLSNDVASTEKIIFLQVRNISITRRKIKLLSFLFEEIQEANSLLPLSSILCLSELFSVIQKVKCLIQACTEGSSLWCLLQTEPISHEFYVLAKEMSRALDILPLSLLKITADIREQVELLLNQARRVELFIDPQELRRREELLQVMTKNNEKKTRIKESLDLGKVEELFSRAGLKSSLDYEGEISKLEAEALKQAGRGGLIVVSNISNLISLVLYAKSMIFNDEEYLKAGEDLKQQSESSNKTFVKSESSKFLIPIPDEYRCPISLDLMKDPVIIASGQTYDRNSIAKWIDSGHHVCPKSSQRLIHLALIPNYALKSLIQQWCQENNVLLSESSASSIPHLERSNNRRDLSNNAVHHNSATKAAADSVKMTSEFLVGKLATGSSEIQRQAAYELRLLAKAGMDNRRIIAEAGAIPFLVTLVSSNDPRLQENAVTALLNLSIFNKNKTLIIAAGAIDNIVDVLESGKTMEARENAAATIFSLSKVDESKVSIGQLPRAVSGLVRLLKEGTSAGKRDAATALYSLALYSANKASVVAAGAVPLLVNLITDDRAGITDDALQVLSLILGCSEGLEEMQKSRALIPLLIDLLRFGSAKGKESSMTLLMGLCKDRAEEVARRLLMNPQSIPSLQSIASTGSLKARRKADALLRLLNRFCSNSHNL 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1311242 1313302 + BLOR13074 Blo04g00162 59190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00162 687 Gene3D - 520 677 IPR011989 -
Blo04g00162 687 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Blo04g00162 687 SUPERFAMILY ARM repeat 400 677 IPR016024 -
Blo04g00162 687 Gene3D - 400 519 IPR011989 -
Blo04g00162 687 SUPERFAMILY RING/U-box 273 356 - -
Blo04g00162 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 358 IPR013083 -
Blo04g00162 687 CDD RING-Ubox_PUB 287 329 IPR045210 -
Blo04g00162 687 SMART arm_5 553 593 IPR000225 GO:0005515
Blo04g00162 687 SMART arm_5 428 468 IPR000225 GO:0005515
Blo04g00162 687 SMART arm_5 469 510 IPR000225 GO:0005515
Blo04g00162 687 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Blo04g00162 687 Pfam Armadillo/beta-catenin-like repeat 430 467 IPR000225 GO:0005515
Blo04g00162 687 PANTHER U BOX DOMAIN-CONTAINING 19 686 - -
Blo04g00162 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 439 481 IPR000225 GO:0005515
Blo04g00162 687 Pfam U-box domain 283 354 IPR003613 GO:0004842|GO:0016567
Blo04g00162 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 19 686 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00162 Blo04g00330 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00162 Blo-Chr4:1311242 Blo11g00265 Blo-Chr11:2133854 2.64E-133 dispersed
Blo12g01082 Blo-Chr12:28518654 Blo04g00162 Blo-Chr4:1311242 1.79E-18 transposed
Blo13g00851 Blo-Chr13:31131878 Blo04g00162 Blo-Chr4:1311242 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00162 - - twl:120014957 915.99