Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00181 ATGGATCCAGACGCCTTCACCGCCAGCTTATTCAAGTGGGACCCTCGAGCTGCGGTTGGAGGACCATCCATCCGCTTACTGGACCAGGTGGCTACCCCACCCACCGGAGTTGCACCTGTCACCACGACCTTCTCGGTCCGACCGAGGGATCTGGGTGGCCTGGAGGACTTGTTTCAGGCTTACGGCATCAGATATTACACGGCTGCCAAGATAGCGGAGCTTGGGTTTACTGTGAGCACTCTTTTGGACATGAAAGATGGGGAGCTGGAGGAGATGATGAACAGCCTCTCACAGATATTTCGGTGGGACCTCTTGGTGGGAGAAAGGTACGGCATTAAAGCAGCCGTTAGAGCCGAGCGAAGACGATTGGACGATGAAATGGAATCGCGGCGCCGCCACTTACTCTCCGCTGATACTGCTAATAACGCTCTTGATGCACTTTCTCAGGAAGGATTGTCGGAGGAGCATGTGCAGCAGGAGAAGGAGGTGGTGGGGAGTGGAGGAGGAACGAGAGAAGTAATTGTGGCTTCAGAGAGGAAGAAACAGCGGCGTAGGAAGGGGCAGAGAAAAACAATCGTCGATTTCGATAACGACGGAAACGAAGTGGGAGAAGAAGACGACGACGACATCAATGGCGGAAATGGAATGAACGAGAGACAACGAGAACACCCGTTCATTGTAACAGAACCAGGAGAAGTTGCCAGAGGGAAGAAAAATGGCCTAGATTATCTTTTCCATCTATACGAACAGTGCCGAGAATTTCTGATGCAGGTGCAGAATATAGCCAAGGACCACGGCGAGAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGATACGCGAAGAAAGCCGGAGCGAGCTACATCAACAAGCCCAAAATGCGACACTACGTTCATTGCTACGCCCTGCACTGTCTGGACGAGGCGGCTTCGAATGCGCTGCGGACGGCTTTCAAGGAGAGGGGTGAAAACGTGGGAGCTTGGCGACAAGCGTGCTACAAACCTCTGGTGGCTGTAGCTGCTCGCCAAGGGTGGGACATCGATGCGATATTCAACTCTCATCCACGTTTGGCAATTTGGTATGTCCCTACCAAACTCCGTCAGCTATGTCATTCTGAGCGTAACAGTATTGCAGCTTCGAGCTGTGTCTCCAATGGCCGTGAACTCGTGCCCTTCTGA 1179 52.76 MDPDAFTASLFKWDPRAAVGGPSIRLLDQVATPPTGVAPVTTTFSVRPRDLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDGELEEMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDDEMESRRRHLLSADTANNALDALSQEGLSEEHVQQEKEVVGSGGGTREVIVASERKKQRRRKGQRKTIVDFDNDGNEVGEEDDDDINGGNGMNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQNIAKDHGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEAASNALRTAFKERGENVGAWRQACYKPLVAVAARQGWDIDAIFNSHPRLAIWYVPTKLRQLCHSERNSIAASSCVSNGRELVPF 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1497225 1498776 - BLOR13093 Blo04g00181 59209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00181 392 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 212 378 IPR035209 GO:0003677
Blo04g00181 392 PANTHER PROTEIN LEAFY 1 387 IPR002910 GO:0003677|GO:0006355
Blo04g00181 392 Pfam Floricaula / Leafy protein SAM domain 50 127 IPR035079 -
Blo04g00181 392 MobiDBLite consensus disorder prediction 177 219 - -
Blo04g00181 392 Gene3D Protein LEAFY 215 384 IPR038276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00181 - - - qsu:112014158 596.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00823 Blo-Chr13:30956027 Blo04g00181 Blo-Chr4:1497225 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00181 . 1 380 Orphan Transcription Factor Family AT5G61850 66.9 8.3e-125 444.1
Blo13g00823 . 1 377 Orphan Transcription Factor Family AT5G61850 64.1 4.6e-123 438.3
Blo07g00112 CCT 1 161 Orphan Transcription Factor Family AT1G06040 64.7 6.5e-55 210.7
Blo01g00195 CCT 1 156 Orphan Transcription Factor Family AT1G06040 61.3 3.7e-50 194.9
Blo07g00980 . 1 106 Orphan Transcription Factor Family AT1G06040 65.1 7.9e-37 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12220 PF17538 C_LFY_FLO 3.60E-108 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00181 Blo_Chr04 FPKM 38.516018 46.235249 16.594656 16.310265 22.85203 19.031122 21.891569 11.883822 11.409016 11.39365