Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00187 ATGGTTGCTGGGTCGTTTTCTGTTGTCTTCCTCCTCCTCGCTGTTCTCAATCTCTACCTTTGCCGCTCTTCTGCTGATTACGGAGGGTGGGAGAGCGCTCATGCCACATTTTATGGCGGTGGTGATGCATCCGGCACAATGGGAGGTGCATGTGGGTATGGCAATTTATATAGCCAAGGATACGGGACTAAGACAGCAGCACTGAGCACTGCTCTGTTCAACAATGGCTTGAGCTGCGGAGCCTGTTACGAAATAACTTGCCGAGATGACCCACAATGGTGCACTGGGGGGACCATCACCGTCACAGCAACAAATTTCTGCCCTCCAAACAATGCATTGGCTAGTAATAATGGTGGTTGGTGCAATCCTCCGCTTCAGCACTTTGACTTGTCCGAGCCGGTTTTCTTGCAAATCGCTCAATATCGGGCCGGCATTGTTCCAGTCTCCTTTAGAAGAGTCCCCTGTATGAAGAAAGGAGGAATAAGGTTCACTGTGAACGGCCACTCTTACTTCAACCTGGTGTTGGTCACAAACGTTGGAGGAGCAGGAGATGTTCACTCTGTATCAATCAAAGGCTCGAAAACTGGCTGGCAGGTCATGTCGAGAAACTGGGGTCAGAATTGGCAGAGCAACTCCTACCTCAACAGCCAGACTCTCTCCTTTCAAGTGACAACCAGCGACGGCCGGACTCTCACAAGCTACGACGTTGCGCCGGCTAACTGGCAATTCGGGCAAACATTTGAGGGAAGCCAATTTTAG 759 50.86 MVAGSFSVVFLLLAVLNLYLCRSSADYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTKTAALSTALFNNGLSCGACYEITCRDDPQWCTGGTITVTATNFCPPNNALASNNGGWCNPPLQHFDLSEPVFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQVMSRNWGQNWQSNSYLNSQTLSFQVTTSDGRTLTSYDVAPANWQFGQTFEGSQF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1518644 1519576 + BLOR13099 Blo04g00187 59215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00187 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Blo04g00187 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Blo04g00187 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Blo04g00187 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Blo04g00187 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Blo04g00187 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Blo04g00187 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Blo04g00187 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Blo04g00187 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Blo04g00187 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Blo04g00187 252 Gene3D - 18 156 IPR036908 -
Blo04g00187 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Blo04g00187 252 Gene3D - 159 252 IPR036749 -
Blo04g00187 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Blo04g00187 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Blo04g00187 252 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Blo04g00187 252 PANTHER EXPANSIN-A15 5 252 IPR002963 GO:0009664
Blo04g00187 252 PANTHER EXPANSIN 5 252 - -
Blo04g00187 252 SMART dpbb_1 65 150 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00187 Blo-Chr4:1518644 Blo16g01112 Blo-Chr16:39592483 2.68E-138 dispersed
Blo18g00408 Blo-Chr18:4373156 Blo04g00187 Blo-Chr4:1518644 5.51E-106 dispersed
Blo13g00832 Blo-Chr13:31013777 Blo04g00187 Blo-Chr4:1518644 2.61E-143 wgd
Blo13g00819 Blo-Chr13:30934850 Blo04g00187 Blo-Chr4:1518644 1.42E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00187 - - csin:114301589 440.654