Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo04g00196 | ATGGCGGCAAAGGTGATCAGTGAGCAGTCAGCCAACAAGGAAGTGACAGAGCAACGGCCAATTCTAGGCCTAGCTTATCACCATTGGCAGTTTATCATGAGGTTGGACTTCAATAGAGAATATAAACTTGGAGCCAAGATGCAAGTAATGGAGGCATTTAGTCGTTTGGGGAAAATAGCAATGCTAGGAAGAGCCACCACTAAAGATTACTCAGAGACACTTGATGGGATCAAGGAGGCAACCAGAGGGGATGTTAGGTGCTTGCTAATTATAAAGCAAGTATATGATGGGTCGGTGAGGAGAAATTACATCGGAGGCAGGCTTGTCAATGCGCGCGGGGAGTTAGAGCTCACCGATTACACGCGACATCAATGGGTCAAAGGGGCGCATCAGGTGCTCAAATCGATAGAGGGTCAGATGGGCCGATTTAGGGAGGCGCGGAGCCTTCCCAAGCGCACAAGTCAAGTAGACAGTACGTACCAAGCAGAGTCTGCGCGCGCAGCGCAGCTAAGCAGATCACTAGCGTCCAAGGCGGAACATGTGAGGGAGAGCTTTGAAGATATAGGAAAGAAAGTATGGAGGAGTACAGATGGCTCTTCTCAAATCGGAACCAGAAGGCCCATTCCGGGTCGTCCTGGAGGCATCAATACCATCACACCATGCGCAGCCTGTAAGTTGTTAAGACGAAGGTGTGCACAAGAATGCCCTTTTTCTCCATATTTCTCTCCTCACGAACCCCACAAGTTCGCTTCTGTCCATAAAGTGTTCGGAGCCAGCAATGTCTCAAAGCTACTTATGGAGGTGGATGAGGGCCAAAGAGCAGATGCTGCTAATAGTCTTGTGTACGAAGCCAACGTGAGGCTGAGAGACCCAGTCTACGGCTGCATGGGGGCTATCTTAAATTTGCAGCAGCAAGTTCAATCTTTGCAAGCAGAGCTCAGCGCAATAAGGGAAGAGATACTGAAATACAATTACGGTGATCCTACTGTAACAATGCCACCTTCGCACGTCTCTTTGCTCAGTTCTTGCGGGGCTGTTTCAGTCATGGGGCCACCCCTTCCACCGCCGCTTCTACCGACCCCAACGCCAAGGCCGCCACTTTTGTCTCCTGATTCCTCCTCTAGCAGTTACCCTCCACCGACCACTGCTGCAAACTACAGCTCCATTACAAGCGATCAAAACGTTACGTACTTTGAGTGA | 1200 | 50.08 | MAAKVISEQSANKEVTEQRPILGLAYHHWQFIMRLDFNREYKLGAKMQVMEAFSRLGKIAMLGRATTKDYSETLDGIKEATRGDVRCLLIIKQVYDGSVRRNYIGGRLVNARGELELTDYTRHQWVKGAHQVLKSIEGQMGRFREARSLPKRTSQVDSTYQAESARAAQLSRSLASKAEHVRESFEDIGKKVWRSTDGSSQIGTRRPIPGRPGGINTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKLLMEVDEGQRADAANSLVYEANVRLRDPVYGCMGAILNLQQQVQSLQAELSAIREEILKYNYGDPTVTMPPSHVSLLSSCGAVSVMGPPLPPPLLPTPTPRPPLLSPDSSSSSYPPPTTAANYSSITSDQNVTYFE | 399 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1563536 | 1566691 | + | BLOR13108 | Blo04g00196 | 59224 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo04g00196 | 399 | MobiDBLite | consensus disorder prediction | 354 | 368 | - | - | |
| Blo04g00196 | 399 | ProSiteProfiles | LOB domain profile. | 219 | 320 | IPR004883 | - | |
| Blo04g00196 | 399 | MobiDBLite | consensus disorder prediction | 354 | 399 | - | - | |
| Blo04g00196 | 399 | MobiDBLite | consensus disorder prediction | 369 | 399 | - | - | |
| Blo04g00196 | 399 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 15 | 207 | 399 | - | - | |
| Blo04g00196 | 399 | Coils | Coil | 299 | 319 | - | - | |
| Blo04g00196 | 399 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 207 | 399 | - | - | |
| Blo04g00196 | 399 | Pfam | Lateral organ boundaries (LOB) domain | 220 | 316 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo03g01196 | Blo-Chr3:38213320 | Blo04g00196 | Blo-Chr4:1563536 | 7.50E-59 | dispersed | |
| Blo04g00196 | Blo-Chr4:1563536 | Blo13g00804 | Blo-Chr13:30805934 | 3.23E-46 | dispersed | |
| Blo17g00346 | Blo-Chr17:3634999 | Blo04g00196 | Blo-Chr4:1563536 | 1.97E-07 | dispersed | |
| Blo13g00737 | Blo-Chr13:30182440 | Blo04g00196 | Blo-Chr4:1563536 | 6.96E-11 | transposed | |
| Blo03g01204 | Blo-Chr3:38313917 | Blo04g00196 | Blo-Chr4:1563536 | 1.73E-42 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 12223 | PF03195 | LOB | 7.80E-40 | No_clan | Blo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo04g00196 | - | - | tcc:18587407 | 256.529 |