Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00218 ATGGGTGGAAATTCACCATGTGCCTCCTGCAAGCTTTTGAGAAGACGATGTGCAAAGGAATGCATCTTCGCCCCTTATTTTCCCTCTGATGACCCTCATAAGTTTGCCATTGTTCACAAGGTTTTCGGAGCGAGCAACATCAGCAAAATGTTGCAGGAGCTTCCAATTCATCAGAGAGCAGATGCAGTGAGCAGTCTGGTTTATGAAGCTAATGCAAGAATGAGAGACCCAGTCTATGGATGCGTAGGAGCTATATCTTATCTTCAAAGCCAGGTTTCTCAGCTTCAAATGGAACTTGCAGTGGCTCAGGCGGAGATTCTGTGCATCCAAATGCAACAAGAGCCCATGGCTGTGCTGCCAAGTACGTCGCCAGTAAACCCAGATGACAAGTCTTATAATTTTCTCCCAAATAATCTCCCCCAGTATCTCAATTTTGCTTCCTCCACTAATGTAATCCACGACTCTCTCAAAAGGGAGAGCCTTTTCAGCCACGACATGGTTTCTTAG 507 45.76 MGGNSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPIHQRADAVSSLVYEANARMRDPVYGCVGAISYLQSQVSQLQMELAVAQAEILCIQMQQEPMAVLPSTSPVNPDDKSYNFLPNNLPQYLNFASSTNVIHDSLKRESLFSHDMVS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1690897 1691575 - BLOR13130 Blo04g00218 59246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00218 168 Coils Coil 85 105 - -
Blo04g00218 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Blo04g00218 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Blo04g00218 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
Blo04g00218 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00218 - - - qsu:112026683 283.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00218 Blo13g00804 CCT
Blo04g00218 Blo13g00804 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00218 Blo-Chr4:1690897 Blo13g00135 Blo-Chr13:4292002 4.12E-48 dispersed
Blo17g00504 Blo-Chr17:7740135 Blo04g00218 Blo-Chr4:1690897 5.66E-49 dispersed
Blo18g00496 Blo-Chr18:6148715 Blo04g00218 Blo-Chr4:1690897 3.47E-48 dispersed
Blo11g00187 Blo-Chr11:1483719 Blo04g00218 Blo-Chr4:1690897 9.35E-61 transposed
Blo15g00606 Blo-Chr15:14709666 Blo04g00218 Blo-Chr4:1690897 8.60E-56 transposed
Blo13g00804 Blo-Chr13:30805934 Blo04g00218 Blo-Chr4:1690897 4.05E-114 wgd
Blo03g01204 Blo-Chr3:38313917 Blo04g00218 Blo-Chr4:1690897 3.29E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g101 . Blo13g00804 . . . Bpe15g01174 Bma03g00230 . Cmo04g00129 Cmo04g01166 Cma04g01102 Cma04g00134 Car04g00127 . . . . . . . . . . . Cla07g00427 Cam07g0466 . . Clacu07g0465 Cmu07g0502 Cre07g0805 . . . . . . . Cme10g01432 . Blo04g00218 Bda14g00236 . . . . . . . . . . . . Cpe01g01020 . . . . . . . . . . . . . . . Lsi04g01066 Csa05g00849 . .
Vvi13g467 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo18g00496 . 3 215 AS2 family AT1G65620 69.2 8.5e-80 293.5
Blo17g00504 . 1 216 AS2 family AT1G65620 67.9 2.3e-77 285.4
Blo11g00391 . 2470 2656 AS2 family AT1G65620 59.2 7.0e-58 220.7
Blo13g00135 BCT 3 136 AS2 family AT1G65620 66.7 1.6e-46 183.0
Blo15g00256 BCT 3 132 AS2 family AT1G65620 65.4 4.7e-46 181.4
Blo04g01033 . 2 110 AS2 family AT1G65620 78.0 4.4e-44 174.9
Blo16g00219 . 1 118 AS2 family AT1G65620 70.3 4.4e-44 174.9
Blo04g01033 . 1 136 AS2 family AT5G66870 77.2 1.3e-55 213.8
Blo18g00496 . 3 111 AS2 family AT5G66870 78.0 2.8e-45 179.5
Blo17g00504 . 4 112 AS2 family AT5G66870 78.0 1.4e-44 177.2
Blo11g00391 . 2471 2579 AS2 family AT5G66870 75.2 1.3e-42 170.6
Blo15g00256 BCT 1 115 AS2 family AT5G66870 67.0 1.0e-39 161.0
Blo13g00135 BCT 1 115 AS2 family AT5G66870 67.8 1.0e-39 161.0
Blo16g00219 . 1 113 AS2 family AT5G66870 66.4 6.7e-39 158.3
Blo04g01033 . 4 118 AS2 family AT2G23660 67.8 1.3e-42 170.6
Blo17g00504 . 6 112 AS2 family AT2G23660 68.2 7.9e-40 161.4
Blo18g00496 . 5 111 AS2 family AT2G23660 68.2 1.0e-39 161.0
Blo15g00256 BCT 8 117 AS2 family AT2G23660 62.7 5.1e-39 158.7
Blo13g00135 BCT 8 113 AS2 family AT2G23660 65.1 1.1e-38 157.5
Blo16g00219 . 8 113 AS2 family AT2G23660 64.2 2.5e-38 156.4
Blo11g00391 . 2473 2579 AS2 family AT2G23660 65.4 9.6e-38 154.5
Blo15g00256 BCT 4 114 AS2 family AT3G27650 79.3 4.0e-48 188.0
Blo13g00135 BCT 4 114 AS2 family AT3G27650 78.4 2.6e-47 185.3
Blo16g00219 . 4 117 AS2 family AT3G27650 75.7 4.5e-47 184.5
Blo18g00496 . 1 111 AS2 family AT3G27650 67.6 3.3e-42 168.3
Blo11g00391 . 2469 2579 AS2 family AT3G27650 67.6 7.4e-42 167.2
Blo17g00504 . 3 112 AS2 family AT3G27650 68.2 7.4e-42 167.2
Blo15g00256 BCT 3 113 AS2 family AT5G63090 93.7 2.5e-57 218.8
Blo13g00135 BCT 3 116 AS2 family AT5G63090 92.1 3.3e-57 218.4
Blo16g00219 . 3 122 AS2 family AT5G63090 79.8 5.8e-54 207.6
Blo18g00496 . 1 111 AS2 family AT5G63090 74.6 2.2e-45 179.1
Blo17g00504 . 3 112 AS2 family AT5G63090 73.6 3.2e-44 175.3
Blo11g00391 . 2470 2579 AS2 family AT5G63090 69.1 1.5e-41 166.4
Blo13g00804 CCT,ECH 4 106 AS2 family AT5G63090 70.9 8.9e-39 157.1
Blo04g00218 CCT,ECH 4 106 AS2 family AT5G63090 69.9 1.5e-38 156.4
Blo11g00187 . 12 122 AS2 family AT5G63090 64.0 2.2e-37 152.5
Blo04g01033 . 2 110 AS2 family AT5G63090 66.1 4.9e-37 151.4
Blo04g00218 CCT,ECH 3 115 AS2 family AT2G30130 90.3 8.3e-56 213.8
Blo13g00804 CCT,ECH 3 115 AS2 family AT2G30130 91.2 1.9e-55 212.6
Blo03g01204 . 185 299 AS2 family AT2G30130 83.5 4.7e-51 198.0
Blo11g00187 . 11 127 AS2 family AT2G30130 70.1 4.3e-44 174.9
Blo15g00606 . 225 357 AS2 family AT2G30130 65.4 1.6e-43 172.9
Blo15g00256 BCT 8 111 AS2 family AT2G30130 67.3 2.3e-37 152.5
Blo13g00135 BCT 8 111 AS2 family AT2G30130 68.3 2.3e-37 152.5
Blo18g00496 . 1 108 AS2 family AT2G30130 64.8 3.0e-37 152.1
Blo17g00504 . 7 110 AS2 family AT2G30130 67.3 3.0e-37 152.1
Blo16g00219 . 8 133 AS2 family AT2G30130 57.1 5.1e-37 151.4
Blo11g00187 . 1 171 AS2 family AT1G31320 71.5 9.7e-64 240.0
Blo15g00606 . 213 341 AS2 family AT1G31320 82.2 3.1e-54 208.4
Blo04g00218 CCT,ECH 2 113 AS2 family AT1G31320 71.4 2.9e-44 175.3
Blo13g00804 CCT,ECH 2 113 AS2 family AT1G31320 70.5 1.1e-43 173.3
Blo03g01204 . 187 295 AS2 family AT1G31320 68.8 8.8e-41 163.7
Blo17g00504 . 8 122 AS2 family AT1G31320 61.9 2.7e-37 152.1
Blo18g00496 . 7 121 AS2 family AT1G31320 62.7 4.5e-37 151.4
Blo03g01266 . 35 210 AS2 family AT2G28500 52.3 2.2e-42 169.5
Blo04g00218 CCT,ECH 5 119 AS2 family AT2G28500 64.3 9.4e-38 154.1
Blo13g00804 CCT,ECH 5 119 AS2 family AT2G28500 63.5 2.1e-37 152.9
Blo15g00606 . 224 331 AS2 family AT2G28500 67.6 1.0e-36 150.6
Blo03g01266 . 31 210 AS2 family AT1G07900 61.0 5.0e-45 177.9
Blo15g00606 . 213 330 AS2 family AT1G16530 69.7 2.0e-42 169.1
Blo11g00187 . 1 142 AS2 family AT1G16530 58.3 4.5e-42 167.9
Blo13g00804 CCT,ECH 5 128 AS2 family AT1G16530 58.0 1.5e-37 152.9
Blo04g00218 CCT,ECH 5 128 AS2 family AT1G16530 58.0 3.3e-37 151.8
Blo04g00196 . 174 329 AS2 family AT2G30340 60.9 6.6e-51 198.0
Blo03g01196 . 154 296 AS2 family AT2G30340 68.9 8.6e-51 197.6
Blo15g00606 . 186 328 AS2 family AT2G30340 51.0 1.2e-36 150.6
Blo04g00196 . 203 365 AS2 family AT2G40470 72.3 3.4e-60 228.4
Blo03g01196 . 170 303 AS2 family AT2G40470 75.4 4.4e-52 201.4
Blo13g00804 CCT,ECH 5 123 AS2 family AT2G40470 66.9 3.3e-39 158.7
Blo04g00218 CCT,ECH 5 125 AS2 family AT2G40470 65.0 2.1e-38 156.0
Blo11g00187 . 12 137 AS2 family AT2G40470 60.3 3.6e-38 155.2
Blo15g00606 . 222 330 AS2 family AT2G40470 64.2 6.2e-38 154.5
Blo03g01204 . 187 294 AS2 family AT2G40470 68.5 6.8e-37 151.0
Blo06g00409 BCT 1 122 AS2 family AT2G42440 79.8 2.1e-51 199.5
Blo05g00396 BCT 1 122 AS2 family AT2G42440 77.4 1.7e-50 196.4
Blo01g00133 . 24 133 AS2 family AT2G42440 66.1 1.5e-38 156.8
Blo01g00132 . 8 110 AS2 family AT2G42440 68.9 2.0e-38 156.4
Blo06g00409 BCT 4 124 AS2 family AT3G58190 82.6 4.4e-53 204.9
Blo05g00396 BCT 4 122 AS2 family AT3G58190 81.0 1.8e-51 199.5
Blo01g00133 . 24 126 AS2 family AT3G58190 74.8 1.0e-41 167.2
Blo12g00316 . 28 128 AS2 family AT3G58190 76.2 4.2e-40 161.8
Blo07g01027 CCT 979 1074 AS2 family AT3G58190 77.1 7.2e-40 161.0
Blo01g00132 . 4 110 AS2 family AT3G58190 68.2 1.2e-39 160.2
Blo05g00396 BCT 1 139 AS2 family AT2G31310 56.8 2.6e-38 155.6
Blo07g01027 CCT 985 1075 AS2 family AT2G42430 87.9 5.1e-42 168.3
Blo06g00409 BCT 3 109 AS2 family AT2G42430 73.8 4.3e-41 165.2
Blo01g00133 . 24 126 AS2 family AT2G42430 74.8 1.3e-40 163.7
Blo05g00396 BCT 3 109 AS2 family AT2G42430 72.9 2.8e-40 162.5
Blo12g00316 . 28 128 AS2 family AT2G42430 73.3 2.6e-38 156.0
Blo01g00132 . 8 113 AS2 family AT2G42430 66.0 1.3e-37 153.7
Blo09g00352 CCT 47 136 AS2 family AT2G42430 80.0 1.4e-36 150.2
Blo01g00133 . 24 221 AS2 family AT4G00220 59.1 1.5e-56 216.5
Blo12g00316 . 28 233 AS2 family AT4G00220 57.9 3.4e-56 215.3
Blo01g00132 . 12 131 AS2 family AT4G00220 65.8 4.4e-40 161.8
Blo12g00316 . 28 234 AS2 family AT2G45420 65.2 2.7e-65 245.7
Blo01g00133 . 24 233 AS2 family AT2G45420 65.5 4.6e-65 245.0
Blo01g00132 . 12 121 AS2 family AT2G45420 76.4 2.5e-47 186.0
Blo06g00409 BCT 7 109 AS2 family AT2G45420 74.8 1.6e-41 166.8
Blo05g00396 BCT 7 109 AS2 family AT2G45420 71.8 3.0e-40 162.5
Blo09g00352 CCT 48 135 AS2 family AT2G45420 84.1 1.6e-38 156.8
Blo07g01027 CCT 987 1074 AS2 family AT2G45420 80.7 5.3e-37 151.8
Blo09g00352 CCT 1 161 AS2 family AT3G03760 62.0 3.8e-46 182.2
Blo01g00133 . 24 125 AS2 family AT3G03760 81.4 2.2e-41 166.4
Blo12g00316 . 28 127 AS2 family AT3G03760 80.0 2.0e-39 159.8
Blo05g00396 BCT 2 111 AS2 family AT3G03760 69.1 2.6e-39 159.5
Blo06g00409 BCT 2 111 AS2 family AT3G03760 70.0 5.9e-39 158.3
Blo01g00132 . 8 113 AS2 family AT3G03760 71.7 8.5e-38 154.5
Blo01g00132 . 5 121 AS2 family AT4G00210 77.8 2.1e-47 186.0
Blo01g00133 . 24 218 AS2 family AT4G00210 53.0 3.4e-45 178.7
Blo12g00316 . 28 135 AS2 family AT4G00210 73.4 1.6e-42 169.9
Blo06g00409 BCT 2 107 AS2 family AT4G00210 67.9 5.2e-38 154.8
Blo05g00396 BCT 2 107 AS2 family AT4G00210 67.0 1.2e-37 153.7
Blo01g00132 . 8 118 AS2 family AT2G45410 82.9 8.0e-51 197.2
Blo01g00133 . 24 129 AS2 family AT2G45410 74.5 1.3e-45 179.9
Blo06g00409 BCT 1 107 AS2 family AT5G06080 67.3 1.6e-37 152.9
Blo07g00773 . 12 168 AS2 family AT3G13850 61.8 1.7e-46 183.3
Blo16g00357 . 1 104 AS2 family AT1G68510 64.4 4.5e-40 161.8
Blo06g00008 CCT,ECH 1 104 AS2 family AT1G68510 62.5 1.5e-38 156.8
Blo18g00717 . 1 130 AS2 family AT1G68510 56.9 7.2e-38 154.5
Blo16g01064 . 4 134 AS2 family AT1G68510 56.0 1.0e-36 150.6
Blo16g00357 . 1 109 AS2 family AT1G67100 67.9 8.0e-45 177.6
Blo06g00008 CCT,ECH 1 119 AS2 family AT1G67100 61.2 3.1e-41 165.6
Blo18g00717 . 1 110 AS2 family AT1G67100 63.6 5.9e-40 161.4
Blo16g01064 . 4 157 AS2 family AT1G67100 50.3 8.5e-39 157.5
Blo16g00357 . 1 104 AS2 family AT3G02550 70.2 2.1e-41 166.4
Blo06g00008 CCT,ECH 1 121 AS2 family AT3G02550 61.5 1.5e-39 160.2
Blo06g00008 CCT,ECH 1 229 AS2 family AT5G67420 59.4 4.2e-68 255.0
Blo16g00357 . 1 229 AS2 family AT5G67420 57.1 2.0e-65 246.1
Blo18g00717 . 1 138 AS2 family AT5G67420 59.7 8.6e-45 177.6
Blo16g00357 . 1 228 AS2 family AT3G49940 60.8 2.4e-71 265.8
Blo06g00008 CCT,ECH 1 228 AS2 family AT3G49940 57.9 1.6e-64 243.0
Blo18g00717 . 1 141 AS2 family AT3G49940 61.0 2.9e-45 179.1
Blo16g00357 . 1 229 AS2 family AT4G37540 56.6 2.9e-66 248.8
Blo06g00008 CCT,ECH 1 229 AS2 family AT4G37540 57.0 3.2e-65 245.4
Blo18g00717 . 1 113 AS2 family AT4G37540 69.9 1.3e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001662 2 3 2 2 3 2 3 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12224 PF03195 LOB 2.40E-42 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00218 Blo_Chr04 FPKM 1.488417 0.619851 4.135093 4.54923 1.077513 1.074182 1.145861 1.0868 0.934617 0.582515