Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00230 ATGGTTTCCATCGTGCAGGAGCTGGACATGTGTAGAGATTCGAAGAATAAACTTGGTTCATTGAATTTGATCATGGAAGATAAGTTTCAGAAGTATGTATCCTCCGAATGCTCTCTTTTGCTTGAATTAGCGGCCACAGATGATGTAGAATCCTTCAGAAAAGAAGTAGAAGAAAAGGGTTTCAATTTTGACGAACCAAGCTTTTGGTATGGAAGAGTGATTGGACCAAAAAGAATGGGACTTGAGGAGCGAACTCCGCTTATGATTGCGGCCATGTTTGGAAACACTAAGGTTGTGAATTACATAATCAAAACTGGCAAAGCCGATGTAAATCGAGCTTGTGGTTCCGATAGAGTCACTGCTCTTCACTGTGCTATTTCTGGCGGCTCAGTTTCTTCTGTGGACACTGTTAAACTCTTACTCAGTGCATCTTCAGATGTTGATCGACTCAACGCCTATGGACAGAAACCAATCGATTTAATCTGCTTAGATCTTAAATCGCCAATAAATTTAAGAAGGAAGATGTTGGAGATGTTGCTGAAAGGTGATGATTTGGAAGAAGGAGAATTGAGCCTCAAACTAGAAGCAGACAAGCTGAACATGACAATGCCCCACTTACCGAAAGGATCCGAGAAGAAAGAATTTCCAGTTGACATATCGCTGCCAGATATAAACTTTGGATTATATGGTACTGATGATTTTAGGATGTATACTTTCAAGGTGAAGCCTTGTTCAAGGGCATACTCTCATGATTGGACAGAGTGCCCTTTTGTTCATCCTGGTGAAAATGCTCGACGGAGAGATCCCCGGAAGTATCCGTATAGCTGTGTTCCCTGCCTGGATTTTCGGAAAGGAAATTGTGAGAAAGGTGATTCATGTGAATATGCACATGGCGTGTTTGAATCATGGCTTCACCCTGCTCAATATCGAACCCGTCTTTGCAAGGACGAGACTGGATGTGCAAGGAAGGTCTGCTTTTTTGCTCACAAACCCGAAGAATTACGGCCGGTGTATGCCTCTACAGGCTCGGCCATGCCCTCTCACCGGCCTCTTTCAGCCAGTGCAATTGATATGGCCATGCTGAGCCCATCGACTCATGGTGCTTCGTCTTTGCCTTTGCCTGCCACTTCGACACCACCATTGTCACCATTGGCAGCCGCTTCGGCACCCAAAAATGGGATTTTGTGGCAGAACAAGTTTAATCTCACACCTCCTGTTCTTCAGCTTCCTGGCAGTCGCTTGAAAACGGCTATGAGTGCCAGAGATCTTAATTTAGAGATGGAATTGCTCGGGATTAAAACGCCTTCCAGCCAACAACAGAATCAGCAGTTAATTGATGAAATATCTCGGCTCTCCTCTCCTACATATTGGAGTAAAGATCGTGGCAGAATTGGAGATTTGAAACCATCTAACCTCGATGATGTATATGGTTCGTTAGATTTGTCCTTGTTGTCTCAATTTGAGGGCCTTCCACTCAATCCGTTGTCCCCTTCTCCATTGCACTCTTCCACTGGGCTTCATATGCATCAAAATTTGAACCAACTTCGTTCGAATTACCCAACCAGTCTCACATCTCCATCGATGAGGAAGCCCGCATCTTTTGGCCTTGACTCAGGCTCATCAGCGGCAGTTATGAGTTCAAGGTCCGCTGCCTTTGCTAAGCGTAGTCAGAGTTTCATTGATCGATCAGCCATCACTCATCTTCCTGACTTTTCGGGTGCTTCTATTTCTGCGGCTACTGTATCTTCCAATCTTTCTGGTTGGAGTTCACCTGATGGAAAGTTGAATTGGGCTGTTAAAGGAGATGAACTCAACAAGTTGAAGAAGTCTGCTTCTTTTGGGATTAAAAACTCTACTGCAGGAATAACCAATGCCACCTTGACCACTGCCTCGGCTTATGAGCCTGATGTCTCGTGGGTTAATTCTTTGGTGAAAGACGTACCTCCTGAGAAACGCAGACTGATTAGTATGGAGAATCGGCAATTCAACCCCGATGAAGGGATTCACGAGGCACTGCCTCCTTGGGTGGAGCAGCTGTACATAGAGCAGGAGCAAGTAGTGGCATAG 2067 45.04 MVSIVQELDMCRDSKNKLGSLNLIMEDKFQKYVSSECSLLLELAATDDVESFRKEVEEKGFNFDEPSFWYGRVIGPKRMGLEERTPLMIAAMFGNTKVVNYIIKTGKADVNRACGSDRVTALHCAISGGSVSSVDTVKLLLSASSDVDRLNAYGQKPIDLICLDLKSPINLRRKMLEMLLKGDDLEEGELSLKLEADKLNMTMPHLPKGSEKKEFPVDISLPDINFGLYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCLDFRKGNCEKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEELRPVYASTGSAMPSHRPLSASAIDMAMLSPSTHGASSLPLPATSTPPLSPLAAASAPKNGILWQNKFNLTPPVLQLPGSRLKTAMSARDLNLEMELLGIKTPSSQQQNQQLIDEISRLSSPTYWSKDRGRIGDLKPSNLDDVYGSLDLSLLSQFEGLPLNPLSPSPLHSSTGLHMHQNLNQLRSNYPTSLTSPSMRKPASFGLDSGSSAAVMSSRSAAFAKRSQSFIDRSAITHLPDFSGASISAATVSSNLSGWSSPDGKLNWAVKGDELNKLKKSASFGIKNSTAGITNATLTTASAYEPDVSWVNSLVKDVPPEKRRLISMENRQFNPDEGIHEALPPWVEQLYIEQEQVVA 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1804209 1806275 - BLOR13142 Blo04g00230 59258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00230 688 ProSiteProfiles Ankyrin repeat profile. 117 152 IPR002110 GO:0005515
Blo04g00230 688 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 27 686 - -
Blo04g00230 688 ProSiteProfiles Ankyrin repeat profile. 82 106 IPR002110 GO:0005515
Blo04g00230 688 ProSiteProfiles Zinc finger C3H1-type profile. 273 300 IPR000571 GO:0046872
Blo04g00230 688 PANTHER UNKEMPT FAMILY MEMBER 27 686 IPR045234 -
Blo04g00230 688 SUPERFAMILY Ankyrin repeat 48 160 IPR036770 -
Blo04g00230 688 Pfam Ankyrin repeats (3 copies) 80 148 IPR002110 GO:0005515
Blo04g00230 688 SMART c3hfinal6 308 331 IPR000571 GO:0046872
Blo04g00230 688 SMART c3hfinal6 273 299 IPR000571 GO:0046872
Blo04g00230 688 Gene3D - 274 336 - -
Blo04g00230 688 ProSiteProfiles Ankyrin repeat region circular profile. 82 106 - -
Blo04g00230 688 SMART ANK_2a 117 149 IPR002110 GO:0005515
Blo04g00230 688 SMART ANK_2a 82 112 IPR002110 GO:0005515
Blo04g00230 688 Gene3D - 42 206 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00230 Blo13g00857 CCT
Blo04g00230 Blo13g00857 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00230 Blo-Chr4:1804209 Blo13g01039 Blo-Chr13:32736790 0 dispersed
Blo07g00496 Blo-Chr7:11955000 Blo04g00230 Blo-Chr4:1804209 5.27E-44 transposed
Blo13g00857 Blo-Chr13:31160361 Blo04g00230 Blo-Chr4:1804209 0 wgd
Blo04g00155 Blo-Chr4:1270802 Blo04g00230 Blo-Chr4:1804209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12226 PF12796 Ank_2 1.60E-08 CL0465 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00230 - - zju:107404189 872.463