Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00232 ATGGCTTCCATCTCTACCAGTCCTCGCACTGTTGAAGATATCTTCAAGGATTACAGTGCTCGACATTCCGGCCTTGTTCGCGCTCTCACATACGATGTAGATGAGTTTTACTCGCTCTGTGATCCAGAAAAGGAAAATTTGTGCTTGTATGGACACCCAAACGAGGCATGGGAGGTAACCCTCCCTGCTGAGGAAGTTCCTCCAGAGCTTCCTGAACCAGCGTTGCGCATTAATTTTGCAAGAGATGGGATGAATCGAAAGGACTGGCTTTCATTAGTGGCTGTGCACAGCGATTGTTGGCTGCTCTCCGTTGCTTTCTACTTTGGTGCTCGATTGAACCGCAATGAAAAGAAGCGCCTGTTTAGTCTGATCAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCTTTTAAAAGAAAAACTCTGTATGGAAAGTGGAAGCAAACCCAGGAACACCACGAAGAGATCAAATGATGGACAGGTAAGAAGCAGCAATTCTAAGATAATCAACGATGAAGACGAGCACAGCGATACCCTTTGCGGAAGCTGTGGTGGCAATTACAGTGGAGACGAGTTTTGGATCGGGTGCGACATCTGCGAGAGGTGGTTTCACGGAAAATGTGTGAAGATAACACCAGCCAAGGCCGAATGTATTGAACACTACAAATGTCCCTCGTGCAGACGGCCTTCGGCTCACAGCTAA 711 47.26 MASISTSPRTVEDIFKDYSARHSGLVRALTYDVDEFYSLCDPEKENLCLYGHPNEAWEVTLPAEEVPPELPEPALRINFARDGMNRKDWLSLVAVHSDCWLLSVAFYFGARLNRNEKKRLFSLINDLPTVFEVVTGRKLLKEKLCMESGSKPRNTTKRSNDGQVRSSNSKIINDEDEHSDTLCGSCGGNYSGDEFWIGCDICERWFHGKCVKITPAKAECIEHYKCPSCRRPSAHS 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1814038 1816306 - BLOR13144 Blo04g00232 59260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00232 236 MobiDBLite consensus disorder prediction 149 169 - -
Blo04g00232 236 SUPERFAMILY FYVE/PHD zinc finger 174 231 IPR011011 -
Blo04g00232 236 ProSitePatterns Zinc finger PHD-type signature. 183 229 IPR019786 -
Blo04g00232 236 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
Blo04g00232 236 CDD PHD_AL_plant 182 231 IPR044104 -
Blo04g00232 236 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 230 - -
Blo04g00232 236 PANTHER CPG BINDING PROTEIN 2 230 IPR045104 GO:0006355|GO:0042393
Blo04g00232 236 SMART PHD_3 182 230 IPR001965 -
Blo04g00232 236 Pfam PHD-finger 183 231 IPR019787 -
Blo04g00232 236 MobiDBLite consensus disorder prediction 149 171 - -
Blo04g00232 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 230 IPR013083 -
Blo04g00232 236 ProSiteProfiles Zinc finger PHD-type profile. 180 232 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00232 - - - rcu:8261734 405.601
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00232 Blo13g00799 CCT
Blo04g00232 Blo13g00799 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00232 Blo-Chr4:1814038 Blo12g00390 Blo-Chr12:20605029 1.91E-111 dispersed
Blo13g00799 Blo-Chr13:30718106 Blo04g00232 Blo-Chr4:1814038 3.28E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00275 BCT 1 250 Alfin-like Transcription Factor Family AT1G14510 83.6 9.1e-111 396.7
Blo02g01188 BCT 1 284 Alfin-like Transcription Factor Family AT1G14510 74.6 2.9e-109 391.7
Blo17g00276 CCT,ECH 1 246 Alfin-like Transcription Factor Family AT1G14510 67.1 8.5e-93 337.0
Blo13g00799 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.8e-79 292.7
Blo12g00390 . 389 618 Alfin-like Transcription Factor Family AT1G14510 60.8 5.9e-78 287.7
Blo04g00232 CCT,ECH 8 229 Alfin-like Transcription Factor Family AT1G14510 60.2 1.3e-77 286.6
Blo16g00972 . 119 325 Alfin-like Transcription Factor Family AT1G14510 72.1 5.5e-76 281.2
Blo01g01452 BCT,CCT,ECH 356 615 Alfin-like Transcription Factor Family AT1G14510 53.4 3.4e-73 271.9
Blo01g00565 . 3 211 Alfin-like Transcription Factor Family AT1G14510 71.3 6.3e-72 267.7
Blo12g01023 BCT,CCT,ECH 15 230 Alfin-like Transcription Factor Family AT1G14510 50.6 4.7e-67 251.5
Blo01g01060 . 5 225 Alfin-like Transcription Factor Family AT1G14510 53.7 3.7e-64 241.9
Blo14g00563 BCT 317 454 Alfin-like Transcription Factor Family AT1G14510 64.0 8.6e-45 177.6
Blo17g00276 CCT,ECH 1 249 Alfin-like Transcription Factor Family AT5G26210 70.6 6.4e-104 374.0
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT5G26210 74.4 1.0e-93 340.1
Blo02g01188 BCT 9 284 Alfin-like Transcription Factor Family AT5G26210 65.8 8.3e-88 320.5
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT5G26210 84.8 3.5e-86 315.1
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT5G26210 74.4 1.9e-84 309.3
Blo12g00390 . 386 620 Alfin-like Transcription Factor Family AT5G26210 59.8 4.0e-82 301.6
Blo13g00799 CCT,ECH 7 240 Alfin-like Transcription Factor Family AT5G26210 57.5 3.4e-81 298.5
Blo01g01452 BCT,CCT,ECH 346 617 Alfin-like Transcription Factor Family AT5G26210 54.1 1.1e-79 293.5
Blo04g00232 CCT,ECH 7 236 Alfin-like Transcription Factor Family AT5G26210 56.0 1.1e-76 283.5
Blo12g01023 BCT,CCT,ECH 20 234 Alfin-like Transcription Factor Family AT5G26210 55.0 9.0e-74 273.9
Blo01g01060 . 2 225 Alfin-like Transcription Factor Family AT5G26210 53.4 1.3e-67 253.4
Blo14g00563 BCT 317 432 Alfin-like Transcription Factor Family AT5G26210 75.9 1.3e-48 190.3
Blo17g00276 CCT,ECH 3 248 Alfin-like Transcription Factor Family AT3G42790 66.9 1.7e-93 339.3
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT3G42790 71.7 7.1e-92 334.0
Blo02g01188 BCT 9 284 Alfin-like Transcription Factor Family AT3G42790 63.8 2.6e-86 315.5
Blo13g00799 CCT,ECH 7 240 Alfin-like Transcription Factor Family AT3G42790 58.1 6.3e-80 294.3
Blo12g00390 . 388 620 Alfin-like Transcription Factor Family AT3G42790 58.1 2.4e-79 292.4
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT3G42790 71.8 3.8e-77 285.0
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT3G42790 79.1 8.5e-77 283.9
Blo04g00232 CCT,ECH 7 229 Alfin-like Transcription Factor Family AT3G42790 57.7 1.1e-76 283.5
Blo01g01452 BCT,CCT,ECH 346 617 Alfin-like Transcription Factor Family AT3G42790 52.5 9.4e-76 280.4
Blo12g01023 BCT,CCT,ECH 20 234 Alfin-like Transcription Factor Family AT3G42790 54.2 5.3e-71 264.6
Blo01g01060 . 4 225 Alfin-like Transcription Factor Family AT3G42790 53.1 7.4e-65 244.2
Blo14g00563 BCT 317 424 Alfin-like Transcription Factor Family AT3G42790 73.1 8.0e-43 171.0
Blo13g00799 CCT,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 4.6e-112 401.0
Blo12g00390 . 386 621 Alfin-like Transcription Factor Family AT5G05610 75.5 3.4e-107 384.8
Blo04g00232 CCT,ECH 1 229 Alfin-like Transcription Factor Family AT5G05610 74.5 4.8e-101 364.4
Blo01g01060 . 2 225 Alfin-like Transcription Factor Family AT5G05610 69.3 1.4e-89 326.2
Blo17g00276 CCT,ECH 8 248 Alfin-like Transcription Factor Family AT5G05610 64.5 4.6e-88 321.2
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT5G05610 63.5 1.2e-83 306.6
Blo02g01188 BCT 9 281 Alfin-like Transcription Factor Family AT5G05610 57.1 5.1e-79 291.2
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT5G05610 61.4 1.6e-72 269.6
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT5G05610 59.4 2.6e-67 252.3
Blo12g01023 BCT,CCT,ECH 20 229 Alfin-like Transcription Factor Family AT5G05610 50.2 4.8e-61 231.5
Blo14g00563 BCT 317 462 Alfin-like Transcription Factor Family AT5G05610 59.2 2.1e-40 162.9
Blo13g00799 CCT,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 4.9e-95 344.4
Blo12g00390 . 424 621 Alfin-like Transcription Factor Family AT3G11200 78.2 1.8e-89 325.9
Blo04g00232 CCT,ECH 43 229 Alfin-like Transcription Factor Family AT3G11200 75.9 2.1e-85 312.4
Blo01g01060 . 40 225 Alfin-like Transcription Factor Family AT3G11200 70.7 4.8e-74 274.6
Blo16g00972 . 117 327 Alfin-like Transcription Factor Family AT3G11200 62.0 5.9e-72 267.7
Blo17g00276 CCT,ECH 44 248 Alfin-like Transcription Factor Family AT3G11200 61.7 3.8e-71 265.0
Blo02g01188 BCT 72 277 Alfin-like Transcription Factor Family AT3G11200 65.5 1.2e-69 260.0
Blo03g00275 BCT 44 252 Alfin-like Transcription Factor Family AT3G11200 64.1 1.6e-69 259.6
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT3G11200 60.8 2.0e-67 252.7
Blo01g01452 BCT,CCT,ECH 416 618 Alfin-like Transcription Factor Family AT3G11200 52.7 2.8e-58 222.2
Blo12g01023 BCT,CCT,ECH 52 229 Alfin-like Transcription Factor Family AT3G11200 50.5 1.5e-51 199.9
Blo14g00563 BCT 319 469 Alfin-like Transcription Factor Family AT3G11200 59.6 9.8e-43 170.6
Blo03g00275 BCT 1 160 Alfin-like Transcription Factor Family AT2G02470 85.6 5.6e-76 281.2
Blo02g01188 BCT 1 192 Alfin-like Transcription Factor Family AT2G02470 71.4 8.4e-72 267.3
Blo17g00276 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 2.1e-62 236.1
Blo13g00799 CCT,ECH 8 153 Alfin-like Transcription Factor Family AT2G02470 67.1 3.5e-54 208.8
Blo12g00390 . 389 536 Alfin-like Transcription Factor Family AT2G02470 66.9 2.3e-53 206.1
Blo04g00232 CCT,ECH 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 8.7e-53 204.1
Blo01g01060 . 5 171 Alfin-like Transcription Factor Family AT2G02470 58.6 3.3e-52 202.2
Blo01g01452 BCT,CCT,ECH 356 527 Alfin-like Transcription Factor Family AT2G02470 57.4 3.8e-48 188.7
Blo01g00565 . 3 117 Alfin-like Transcription Factor Family AT2G02470 79.1 1.4e-47 186.8
Blo16g00972 . 119 239 Alfin-like Transcription Factor Family AT2G02470 73.6 5.5e-47 184.9
Blo12g01023 BCT,CCT,ECH 15 151 Alfin-like Transcription Factor Family AT2G02470 60.6 2.3e-45 179.5
Blo14g00563 BCT 317 439 Alfin-like Transcription Factor Family AT2G02470 68.5 4.8e-43 171.8
Blo17g00276 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 1.3e-66 249.6
Blo03g00275 BCT 3 165 Alfin-like Transcription Factor Family AT5G20510 71.5 6.3e-64 240.7
Blo02g01188 BCT 3 196 Alfin-like Transcription Factor Family AT5G20510 61.7 5.0e-61 231.1
Blo13g00799 CCT,ECH 7 172 Alfin-like Transcription Factor Family AT5G20510 60.1 1.7e-53 206.1
Blo01g01060 . 4 156 Alfin-like Transcription Factor Family AT5G20510 62.3 6.5e-53 204.1
Blo12g00390 . 388 538 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Blo04g00232 CCT,ECH 7 136 Alfin-like Transcription Factor Family AT5G20510 69.7 1.9e-52 202.6
Blo16g00972 . 119 239 Alfin-like Transcription Factor Family AT5G20510 76.9 1.4e-50 196.4
Blo12g01023 BCT,CCT,ECH 20 162 Alfin-like Transcription Factor Family AT5G20510 62.2 3.9e-50 194.9
Blo01g00565 . 3 117 Alfin-like Transcription Factor Family AT5G20510 78.3 2.0e-49 192.6
Blo01g01452 BCT,CCT,ECH 346 536 Alfin-like Transcription Factor Family AT5G20510 53.1 7.4e-49 190.7
Blo14g00563 BCT 317 439 Alfin-like Transcription Factor Family AT5G20510 68.3 7.7e-46 180.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12227 PF12165 Alfin 4.00E-66 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00232 Blo_Chr04 FPKM 37.672573 39.7202 30.271864 30.405821 50.043915 48.631302 55.058475 28.100887 27.316355 29.271177