Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00232 ATGGCTTCCATCTCTACCAGTCCTCGCACTGTTGAAGATATCTTCAAGGATTACAGTGCTCGACATTCCGGCCTTGTTCGCGCTCTCACATACGATGTAGATGAGTTTTACTCGCTCTGTGATCCAGAAAAGGAAAATTTGTGCTTGTATGGACACCCAAACGAGGCATGGGAGGTAACCCTCCCTGCTGAGGAAGTTCCTCCAGAGCTTCCTGAACCAGCGTTGCGCATTAATTTTGCAAGAGATGGGATGAATCGAAAGGACTGGCTTTCATTAGTGGCTGTGCACAGCGATTGTTGGCTGCTCTCCGTTGCTTTCTACTTTGGTGCTCGATTGAACCGCAATGAAAAGAAGCGCCTGTTTAGTCTGATCAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCTTTTAAAAGAAAAACTCTGTATGGAAAGTGGAAGCAAACCCAGGAACACCACGAAGAGATCAAATGATGGACAGGTAAGAAGCAGCAATTCTAAGATAATCAACGATGAAGACGAGCACAGCGATACCCTTTGCGGAAGCTGTGGTGGCAATTACAGTGGAGACGAGTTTTGGATCGGGTGCGACATCTGCGAGAGGTGGTTTCACGGAAAATGTGTGAAGATAACACCAGCCAAGGCCGAATGTATTGAACACTACAAATGTCCCTCGTGCAGACGGCCTTCGGCTCACAGCTAA 711 47.26 MASISTSPRTVEDIFKDYSARHSGLVRALTYDVDEFYSLCDPEKENLCLYGHPNEAWEVTLPAEEVPPELPEPALRINFARDGMNRKDWLSLVAVHSDCWLLSVAFYFGARLNRNEKKRLFSLINDLPTVFEVVTGRKLLKEKLCMESGSKPRNTTKRSNDGQVRSSNSKIINDEDEHSDTLCGSCGGNYSGDEFWIGCDICERWFHGKCVKITPAKAECIEHYKCPSCRRPSAHS 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1814038 1816306 - BLOR13144 Blo04g00232 59260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00232 236 MobiDBLite consensus disorder prediction 149 169 - -
Blo04g00232 236 SUPERFAMILY FYVE/PHD zinc finger 174 231 IPR011011 -
Blo04g00232 236 ProSitePatterns Zinc finger PHD-type signature. 183 229 IPR019786 -
Blo04g00232 236 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
Blo04g00232 236 CDD PHD_AL_plant 182 231 IPR044104 -
Blo04g00232 236 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 230 - -
Blo04g00232 236 PANTHER CPG BINDING PROTEIN 2 230 IPR045104 GO:0006355|GO:0042393
Blo04g00232 236 SMART PHD_3 182 230 IPR001965 -
Blo04g00232 236 Pfam PHD-finger 183 231 IPR019787 -
Blo04g00232 236 MobiDBLite consensus disorder prediction 149 171 - -
Blo04g00232 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 230 IPR013083 -
Blo04g00232 236 ProSiteProfiles Zinc finger PHD-type profile. 180 232 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00232 Blo13g00799 CCT
Blo04g00232 Blo13g00799 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00232 Blo-Chr4:1814038 Blo12g00390 Blo-Chr12:20605029 1.91E-111 dispersed
Blo13g00799 Blo-Chr13:30718106 Blo04g00232 Blo-Chr4:1814038 3.28E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12227 PF12165 Alfin 4.00E-66 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00232 - - rcu:8261734 405.601