Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00243 ATGGCATCTGCTTATCGAGATCGAACGACGGAGTTTCTATCTTTGTCTGATACGCTGAAGAAGATCGGACCAATCAAAACAGTTGGCCAAGCTGAAAACGAGACCTCTCCTTATATACCTTCCCGACCTGTCTCTTCCAAGTCCGAATTCAATAGGAAGGCTTCGCAAATTTGTTTCGGAATACATGAGATCTCTCACAAGATTGCTCGACTTGCGCAATTGGCAAAAAGATCATCAATGTTTGATGACCCAATTGTGGAAATACAGGAATTGACCGTTTTCATAAAGAACGATATAACAGCTTTGAATGTAGCTCTCTCTGATCTACAAACTATTCAAAACATGGAAATGGCCGATGGAAGCTATTCTGAGGATAAAGTTGTTCACTCAACAGCTGTTTGTGATGACTTGAAAAACAGACTCATGGGGGTTACTAAACATCTTCAAAATGTGTTAACAACAAGAACAGAGAACATAAAAGCAAATGAGAGTAGGAAGCAGATATTCTCCGCAACTGTAACTAAAGAAAATGCTTCTCAAAACCATGCAAAGACAGTGTCTCAGCCACCACCGTGGTTAATTTCATCAAATACATCTGAGAGTTCTCAACCACCAACATTGCCAGTAAATGGAGCCCAATTTGGTAGTCAACTGAGGAGAAGGTTAGCTGTTGAAAACACTCCATCCCAGCATATGGAAATGTCAATGTTACAGCAGGAGGTTCCAAGACAGGAAAATTATTCAGAAAGTCGTGGGGTTGCTCTCCATAATGTTGAATCCACGATATCAGAACTCAGTGGAATCTTTACGCATTTGGCTACAATGGTTGCTCATCAAGGGGAACTGGCCATCAGGATTGACGATAACATGGATGAATCGTTGGCTAATGTCGAAGGGGCTCGCAGCTCTCTGTTAAGGCATCTCAACCGAATATCGTCAAATAGGTGGCTTGTCATCAAAATATTTGGGATAATTATAATTTTTCTAATGGTATTTATTTTTTTCATGGCCTGA 1014 40.63 MASAYRDRTTEFLSLSDTLKKIGPIKTVGQAENETSPYIPSRPVSSKSEFNRKASQICFGIHEISHKIARLAQLAKRSSMFDDPIVEIQELTVFIKNDITALNVALSDLQTIQNMEMADGSYSEDKVVHSTAVCDDLKNRLMGVTKHLQNVLTTRTENIKANESRKQIFSATVTKENASQNHAKTVSQPPPWLISSNTSESSQPPTLPVNGAQFGSQLRRRLAVENTPSQHMEMSMLQQEVPRQENYSESRGVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSSLLRHLNRISSNRWLVIKIFGIIIIFLMVFIFFMA 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1874000 1876594 - BLOR13155 Blo04g00243 59271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00243 337 Pfam SNARE domain 282 333 IPR000727 -
Blo04g00243 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Blo04g00243 337 PANTHER SYNTAXIN 4 336 IPR045242 -
Blo04g00243 337 SMART tSNARE_6 240 307 IPR000727 -
Blo04g00243 337 CDD SNARE_syntaxin5 248 336 - -
Blo04g00243 337 Gene3D - 45 300 - -
Blo04g00243 337 SUPERFAMILY t-snare proteins 48 300 IPR010989 GO:0016020|GO:0016192
Blo04g00243 337 PANTHER SYNTAXIN-31 4 336 - -
Blo04g00243 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00243 Blo-Chr4:1874000 Blo17g00037 Blo-Chr17:220725 1.21E-73 dispersed
Blo04g00243 Blo-Chr4:1874000 Blo18g00047 Blo-Chr18:315482 8.70E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00243 K08490 - mnt:21409051 465.692