Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00245 ATGGAGGGTAAGGAAGAAGACGTAAGATTGGGAGCCAATAAGTTCCCGGAGAGGCAGCCCATAGGGACGGCCGCGCAGAGCCAAGATGATACCAGGGACTACAAGGAGCCACCGCCGGCGCCTCTTTTTGAGCCCGGCGAGCTTACGTCGTGGTCTTTTTACAGAGCTGGAATCGCAGAGTTCATCGCCACCTTTCTGTTTTTGTACGTCACGATTCTAACCGTGATGGGGGTCCTTCGAACGAACCAAGCTTCAGGCAGCATGTGCGGAACTGTCGGAATTCAGGGAATCGCGTGGGCTTTCGGGGGCATGATCTTCGCCCTCGTCTACTGTACTGCCGGAATATCAGGGGGTCATATAAATCCGGCGGTGACGTTCGGGCTGTTTCTGGCAAGGAAGCTTTCGTTAACTCGGGCGATATTCTACATGGTGATGCAGTGTCTTGGAGCCATTTGTGGTGCTGGCGTGGTGAAGGGGTTTCAGCCGAAGTTCTACGAGAATTTGGGTGGTGGAGCCAACCACGTAAACTCTGGCTACACCAAAGGCGACGGCCTTGGCGCAGAGATTGTCGGTACTTTCGTTCTTGTTTACACTGTTTTCTCCGCCACCGATGCCAAACGAAGCGCCAGAGACTCCCATGTTCCTATTTTGGCTCCTCTGCCAATTGGATTTGCTGTTTTCTTGGTGCACTTAGCAACCATTCCCATAACAGGCACAGGCATAAACCCAGCTAGGAGTTTAGGGGCAGCTATAATCTTTAACGAAGAGCTAGGCTGGCATGAACATTGGATTTTCTGGGTGGGACCTTTCATTGGTGCTGCTCTTGCAGCTCTTTACCATCAGGTGGTGATCAGAGCCATGCCTTTTAAATCCAAGTGA 879 52.1 MEGKEEDVRLGANKFPERQPIGTAAQSQDDTRDYKEPPPAPLFEPGELTSWSFYRAGIAEFIATFLFLYVTILTVMGVLRTNQASGSMCGTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKFYENLGGGANHVNSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNEELGWHEHWIFWVGPFIGAALAALYHQVVIRAMPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1890557 1891695 + BLOR13157 Blo04g00245 59273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00245 292 MobiDBLite consensus disorder prediction 1 40 - -
Blo04g00245 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Blo04g00245 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Blo04g00245 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Blo04g00245 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Blo04g00245 292 PANTHER AQUAPORIN PIP 1-3 1 292 - -
Blo04g00245 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Blo04g00245 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01123 Blo-Chr2:42493006 Blo04g00245 Blo-Chr4:1890557 1.39E-176 dispersed
Blo04g00245 Blo-Chr4:1890557 Blo14g00177 Blo-Chr14:1386783 7.15E-141 dispersed
Blo04g00245 Blo-Chr4:1890557 Blo03g00226 Blo-Chr3:5084808 4.04E-178 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00245 K09872 - csv:101215145 540.421