Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00246 ATGGCGCCGAGCGAAAGCACAGTTTTGCAATTTGCCCCTTCTTCGACTAGCTTGTCTGCGAAGGTTCATCCTTTGGTTATTTTCAACATCTGTGACTGTTACGTTCGACGCCCTGACCAAGCCGAGCGGGTAATCGGAACTCTACTTGGATCTGTTTTACCTGACGGTACCGTCGATATCCGAAATTCGTATGCCGTTCCTCACAACGAGTTCTCCGATCAGGTTGCCTTGGATATCGATTATCACCATAATATGTTAATTTCCCACCAAAAGGTGAACCCAAAGGAAGCCATTGTTGGATGGTACTCAACTGGCCTGGGGGTTACTGCTGGCAGTTCTTTGATTCATGATTTTTATTCAAGAGAAGTTCCCAACCCTATTCATTTGACTGTTGACACGGGCTTCAGGAATGGTGAGGGTACCATCAAAGCTTATGTCTCGGTCAATTTGTCTTTGGGAGACAGACAGCTGGCCGCCCAATTTCAAGAAATTCCTCTAGATCTTCGTATGGTTGAAGCTGAGCGAGTTGGATATGATATTCTTAAGTCTACAATGGTTGAAAAACTACCCAATGATTTGGAAGGAATGGAAGCCTCGATGGAACGTTTACTATGTCTAATTGATGATGTCTACAAATACGTGGACAATGTTGTGGAAGGTCATGTTGCGCCCGACAACAACATAGGAAGATTTATAGCTGATACAGTTGCATCCCTGCCAAAAATGTCGCCATCATCTTTTGATAAACTAATGAATGAAAACCTTCAGGATCATTTGGTGTTGCTATATTTGTCAAGTATCACCAGAACGCAGCTTAGCTTGGCTGAAAAGTTGAATACAGCAGCTCAGAACCTGTAA 858 43.59 MAPSESTVLQFAPSSTSLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLISHQKVNPKEAIVGWYSTGLGVTAGSSLIHDFYSREVPNPIHLTVDTGFRNGEGTIKAYVSVNLSLGDRQLAAQFQEIPLDLRMVEAERVGYDILKSTMVEKLPNDLEGMEASMERLLCLIDDVYKYVDNVVEGHVAPDNNIGRFIADTVASLPKMSPSSFDKLMNENLQDHLVLLYLSSITRTQLSLAEKLNTAAQNL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1893711 1895909 + BLOR13158 Blo04g00246 59274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00246 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 9 285 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo04g00246 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo04g00246 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Blo04g00246 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 9 285 - -
Blo04g00246 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Blo04g00246 285 Gene3D Cytidine Deaminase, domain 2 8 186 - -
Blo04g00246 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo04g00246 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo04g00246 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00246 Blo-Chr4:1893711 Blo09g00266 Blo-Chr9:11684039 1.44E-32 dispersed
Blo04g00246 Blo-Chr4:1893711 Blo07g01148 Blo-Chr7:31327882 1.21E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00246 K03249 - csv:101205957 507.294