Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00277 ATGGGGAAGAATGAATTTCTCACGCCTAAAGCGATTGCGAACAGAATCAAGGCCAAAGGTCTTCAGAAGCTCAGATGGTACTGCCAGATGTGTCAGAAGCAATGCCGAGATGAAAACGGCTTTAAATGCCACTGTATGAGCGAGAGTCACCAGCGCCAAATGCAAATCTTTGGTCAAAACCCCTCTCGAATCGTCGATGGATATTCAGAAGAGTTCGAAAGCACTTTTATGGAGCACATGAAACGTAGCCACAGGTTCAGCCGCATCGCCGCCACGGTTGTGTACAATGAATATATCAGTGATAGGCATCATGTTCATATGAATTCGACGCAGTGGGCTACGCTCACTGAGTTCGTCAAGTATTTGGGTCGAATTGGGAAATGTAAGGTGGAGGAGACCCCAAAAGGTTGGTTTATTACGTATATAGATAGAGATTCTGAGACTCTTTTTAAGGAAAAGATGAAAAATAAGAGGATACGAGCCGATTTAGCAGAAGAAGAGAAGCAAGAGAGGGAGATAAAGAAGCAGATTGAGAGGGCTGAGCAGCTGATCCCATTATCTGCTGAGACTTCTCAGCCTCTCGAGCCAGAAGAAGCAAGGGAACTAAAGTTAGAAACTGGGGTTAAGATTGGATTTGCACTTGGGTCTTCCTCTAAATTAAAGGAAAAGACAGAGAGTTCGAAGTTGATATTCAATGAAGCGGAGAACGAGGGAAGTGGAAGAAGTAAAAATGGTGAAAATTCACATAAGAATGGCAGCAGTGGTGGTGGACGATCAGCATTGGAGGAGTTGATGAGAGAGGAAGAAAAGAAAAAGGAGAAAATTAACAGGAAAGATTACTGGTTGTGTGAAGGGATAATTGTTAAGATTATGAGCAAAGCATTGGCAGAGAAGGGATACTATAAACAGAAGGGTGTCGTGAAGAAAGTGATTGACAAATATGTTGGAGAAATCGAAATTCTCGAAAATAAGCATGTTCTAAGAGTAGATCAAGAAGAGCTTGAGACTGTGATTCCACAAATCGGCGGTCTTGTGAGAATAGTAAATGGAGCATACCGGGGTTCAAATGCAAAGTTATTGGGAGTCGATATGGACAGGTTCTGTGCCAAGGTGCAGATAGAGAAGGGCGTCTATGATGGCAGGGTTCTAAATGCTGTTGACTATGAAGATATTTGTAAAGTTATCTTGATGGCAGATGGGGAAGACATTCAGCCTCTCGTTTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGACGCCCCCAGAGCTGTGTTCCCAAGCATTGTAGGCCGTCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAAGATGCTTATGTTGGCGACGAGGCTCAGTCAAAGCGTGGTATTTTAACATTGAAGTACCCAATTGAGCATGGAATAGTGAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCTGAGGAGCATCCTGTTCTCCTTACAGAGGCTCCTCTTAACCCAAAAGCCAACCGCGAAAAAATGACCCAGATCATGTTTGAGACCTTCAACGCTCCTGCTATGTATGTAGCAATTCAAGCTGTTCTATCGCTATATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTTAGTCATACTGTCCCTATATATGAGGGGTATGCTCTTCCACATGCTATCCTTCGTCTCGACTTGGCTGGCCGTGATCTCACTGATCACTTGATGAAAATTCTCACAGAGCGTGGGTACTCGTTTACGACAACAGCTGAGCGGGAAATTGTGAGAGACATGAAGGAGAAATTAGCATACATTACCCTTGACTATGAACAGGAGATGGAAACTGCCAGGACCAGCTCTTCTGTTGAGAAGAGCTATGAATTGCCTGATGGCCAAGTTATTACCATTGGTGCTGAGCGTTTCCGATGCCCGGAGGTTCTTTTCCAACCCTCGATGATCGGAATGGAAGCAGCAGGCATTCATGAGACAACATATAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTGTATGGAAACATAGTTCTCTCAGGTGGTTCAACCATGTTTCCAGGAATTGCTGATAGAATGAGCAAGGAAATTTCTGCACTTGCTCCAAGCAGCATGAAGATAAAGGTGGTGGCCCCACCAGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCACTGAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATACGATGAATCTGGCCCATCAATTGTGCACCGGAAATGCTTTTAA 2322 44.57 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPSRIVDGYSEEFESTFMEHMKRSHRFSRIAATVVYNEYISDRHHVHMNSTQWATLTEFVKYLGRIGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIRADLAEEEKQEREIKKQIERAEQLIPLSAETSQPLEPEEARELKLETGVKIGFALGSSSKLKEKTESSKLIFNEAENEGSGRSKNGENSHKNGSSGGGRSALEELMREEEKKKEKINRKDYWLCEGIIVKIMSKALAEKGYYKQKGVVKKVIDKYVGEIEILENKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNAKLLGVDMDRFCAKVQIEKGVYDGRVLNAVDYEDICKVILMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYITLDYEQEMETARTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2106707 2110812 - BLOR13189 Blo04g00277 59305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00277 773 Gene3D Actin; Chain A, domain 4 578 669 - -
Blo04g00277 773 Coils Coil 258 278 - -
Blo04g00277 773 Gene3D - 339 394 IPR014722 -
Blo04g00277 773 CDD NBD_sugar-kinase_HSP70_actin 406 579 - -
Blo04g00277 773 SUPERFAMILY Actin-like ATPase domain 402 551 IPR043129 -
Blo04g00277 773 PANTHER ACTIN 397 772 IPR004000 -
Blo04g00277 773 Coils Coil 154 183 - -
Blo04g00277 773 PRINTS Actin signature 538 557 IPR004000 -
Blo04g00277 773 PRINTS Actin signature 459 481 IPR004000 -
Blo04g00277 773 PRINTS Actin signature 634 650 IPR004000 -
Blo04g00277 773 PRINTS Actin signature 513 526 IPR004000 -
Blo04g00277 773 PRINTS Actin signature 424 433 IPR004000 -
Blo04g00277 773 PRINTS Actin signature 447 458 IPR004000 -
Blo04g00277 773 MobiDBLite consensus disorder prediction 233 260 - -
Blo04g00277 773 CDD KOW_KIN17 341 394 IPR041995 -
Blo04g00277 773 PANTHER - 397 772 - -
Blo04g00277 773 SMART actin_3 403 773 IPR004000 -
Blo04g00277 773 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Blo04g00277 773 ProSitePatterns Actins and actin-related proteins signature. 502 514 IPR020902 -
Blo04g00277 773 SMART Kin17_mid_2 52 178 IPR019447 -
Blo04g00277 773 ProSitePatterns Actins signature 1. 451 461 IPR004001 -
Blo04g00277 773 ProSitePatterns Actins signature 2. 754 762 IPR004001 -
Blo04g00277 773 Gene3D - 536 736 - -
Blo04g00277 773 Gene3D - 60 159 IPR038254 -
Blo04g00277 773 Pfam KN17 SH3-like C-terminal domain 277 330 IPR041330 -
Blo04g00277 773 Pfam Actin 401 773 IPR004000 -
Blo04g00277 773 Gene3D - 285 338 - -
Blo04g00277 773 Gene3D - 406 767 - -
Blo04g00277 773 SUPERFAMILY beta-beta-alpha zinc fingers 26 62 IPR036236 -
Blo04g00277 773 SUPERFAMILY Actin-like ATPase domain 545 773 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00277 Blo-Chr4:2106707 Blo09g00434 Blo-Chr9:15322752 0 dispersed
Blo04g00270 Blo-Chr4:2054600 Blo04g00277 Blo-Chr4:2106707 5.99E-18 proximal
Blo14g00781 Blo-Chr14:24293763 Blo04g00277 Blo-Chr4:2106707 2.33E-47 transposed
Blo15g00369 Blo-Chr15:5036949 Blo04g00277 Blo-Chr4:2106707 1.03E-73 transposed
Blo19g00184 Blo-Chr19:7939558 Blo04g00277 Blo-Chr4:2106707 4.26E-06 transposed
Blo07g00639 Blo-Chr7:20766735 Blo04g00277 Blo-Chr4:2106707 1.12E-54 transposed
Blo13g00886 Blo-Chr13:31432644 Blo04g00277 Blo-Chr4:2106707 0 wgd
Blo13g01078 Blo-Chr13:32931045 Blo04g00277 Blo-Chr4:2106707 0 wgd
Blo13g00761 Blo-Chr13:30365111 Blo04g00277 Blo-Chr4:2106707 0 wgd
Blo14g00119 Blo-Chr14:859346 Blo04g00277 Blo-Chr4:2106707 0 wgd
Blo04g00108 Blo-Chr4:922039 Blo04g00277 Blo-Chr4:2106707 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00277 K10355 - cit:102619732 750.355