Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00302 ATGGAGGCGGCTTCCAAAACCATAAACCCTCTCGTAGCATTCGACCACAAGAGAACTCGTGCTAACGTAGGCCGAGCGCTATGGAAAGTGGAAATAAGTATTCAGGAAATGTTGTTCTCTAGTTTGAGTAGGCTCTCATTGGAGGCCGATTGCAGGGATGCATATGGGTTTGCTGTGAGACCTCAACATGTACAAAGATATCGAGAATACGCCAACATATACAAGGAGGAAGAGGAAGAAAGATCAGATAGGTGGAATTTGTTCTTGGAACAACAACTAGAGTCTTCCCAGTTGCTTGTAAATGGGTCATTAATTGAAGAAGATAAAAAGGTGCATGGCAATGAAGCTTCTGAGCAAGAAACAGAGGCTAGGACAGAAAAAGATGTTAAAGGAGAAGATCTAAGCAGCGTGAATTCTGATTCTTTTGATTTGAGTCAAAATGGTGTAAAAAAAGGGAAGGTGCCAGCGAATACGGATGCAAAATCTCATAGGATACAGATATGGGCAGATATCAGACCATCTCTTCATTCAATTGAAGAGATGATGAGTGGTCGAGTAAGGAAAAAGAAAGGTTTATCAAGAAATGAACATGAGAATGGAACGAGGAAACTCCTTCCATCCATTGATGAAGCTCGATCTCCAAAAGGGATGTCTGAGGAAGATTCTGAAGATGAATTCTATGATGTTGAAAGGTCGGATCCAATTCAAGATACACCTTCAAATGATAATGCAAGTGGCCATGTGATCGGTTCTACTGGTGTTGTGGCCTCTTCTGAATCTTTATCTCCATGGAAGGAGGAGTTGGAGGTTCTTGTTCAAGGAGGAGTACCTATGGCTCTCAGGGGCGAGCTTTGGCAGGCCTTTGTGGGAGTGAGAACACGACGAGTGGAAAAGTATTACGAGGAGTTGCTAGCGCCAGAATCTAATTCTGGCAATAACACTGAACAACGTAGCTTTCATTCAGATAAACCCGTTACTGATTCTGATTTACCCCGTACATTTCCAGGCCATCCTGCTCTGGATGAAGGTGGTAGAAATGCATTGAGACGGTTACTGACTGCTTATGCACGGCATAATCCTTCCGTTGGGTACTGCCAGGCAATGAATTTCTTCGCTGCATTACTACTGCTCCTCATGCCTGAAGAAAATGCCTTCTGGACCTTAATGGGCATAATTGATGACTACTTTGATGGATATTATTCTGAGGAAATGATTGAGTCCCAGGTAGATCAACTTGTTTTTGAGGAATTAGTTCGTGAGAGATTTCCAAAATTGGTCAATCACCTTGATTACTTGGGGGTGCAGGTCGCATGGGTTAGTGGACCATGGTTCCTATCCATATTTATGAATATGTTACCTTGGGAAAGTGTTCTTCGTGTATGGGATGTTCTTCTTTTCGAAGGAAATCGTGTCATGCTATTCAGAACTGCACTTGCACTGATGGAACTATATGGACCTGCCTTGGTTACAACAAAGGATGCTGGGGATGCAGTGACATTGCTACAGTCATTGGCTGGCTCAACATTCGATAGCAGTCAACTTGTTCTGACAGCGAGTATGGGCTATCAAAATGTAAATGAAACCAGATTGCAAGAGTTAAGAAATAACCATAGACCAGCTGTATCTTTTTCCATTGAGGAAAGGTTGAAGGGACTTCGAACATGGAAGGACTCTCAGGGTTTGGCTTCTAAACTGTATAGTTTTAAGCATGACTCAAAATCGATGATGATAGAAACCAAAGACAAACATACAGAAGGTGGTCTCTCTCGTTCAGAGTCTGGATCCACTAATATAGATGAAATTCTTATTCCATTGACTGAGGATGTGGAAATAGATTCGGTTAAAGATCTTCAGGACCAGGTTGAACAATTAGAGCAAGAGGTGGCTGAACTTCAACGAGCTCTCTCTGATAAACAGGAACAAGAACATGCCATGCTGCAGGTTCTAATGCGGGTTGAGCAAGAGCAAAGAGTGACAGAAGATGCCCGGCGTTTTGCTGAGCAAGATGCCGAAGCACAAAGATATGCAGCTCAAGTGCTTCAGCAAAAGTATGAAGAGGCTACTGCTGCACTTGCTCAAATGGAGAAGAGGGTGGTTATGGCAGAATCAATGTTGGAAGCTACTTTGCAGTATCAAACAGGACAGCTAAAAACTCAACCTTCTCCAAGATCTTCACAACCAGATTCCCCTTCAGTGCGAAACTCTCAAGAACACCAACCGGATTTGCCTGGAAGAAAGATTAATTTGCTAGGCCGACCATTTGGATTTGGCTGGCGTGACAGAAGCAAGAGCAAATCGGCCACCGCCGATGATTCATATGATGGAAAAACTCCCACTGCCGATGGTTCGAGTGACGGAAAAACTATCGAGCATGGAATGAATGCTACTAATTCTCAAGAGAAAGAGACTGATGGCCTCCATGATAAAGAAGGGGCTTGTGTAATTCTAGTGAAGTACAAGGACGTTACTGTAAAAAGAGGCAAAGGGAAAAAGAGTTATACTGGAAAAGTTCAATATTATTCCAACTCTCTCTCTAGCCCTCTCTCCGTTCCTCAGTTCTGCACTTTGAGCCAGAGAGGGAATATAGCGATGAGTTGTTTCTTCTGTTCAGGAAATTCAAAGAAAAACGGCAAAAAGAAGCCAAAAGATCAGATCTCATCTACTTCAGATAAGTTTACAGTGAATACTTCATTTAATGTGAAGAAGGAGGGCCCAAAAGATGGAGGATCTGATCATATTTCAGCACAAACATTTACATTTCGTGAATTGGTTGCTGCAACAAAAAATTTCCGAGCAGATTGTCTTTTGGGTGAAGGAGGCTTTGGTCGAGTATATAAGGGACGGCTGGAAAGTATAAATCAGGCTGTTGCCATCAAACAACTTGATCGAAACGGGCTGCAAGGGAACAGGGAATTCCTTGTTGAAGTACTGATGTTGAGTCTGCTTCATCACCAAAATCTTGTTAACCTAATTGGTTATTGTGCTGATGGGGATCAAAGACTTTTGGTGTATGAATACATGCCATTGGGATCATTGGAAGACCATCTACATGATATTCCACCCGATAAAAAAAGACTAGACTGGAATACACGAATGAGGATAGCAGCAGGTGCTGCAAAGGGCTTGGAGTATTTGCATGACAAAGCCAATCCTCCTGTTATATATCGTGATTTGAAATGTTCAAACATTTTGCTTGGAGAAAGCTATAATCCAAAGCTATCTGATTTTGGCCTTGCGAAACTGGGTCCCGTAGGAGATAAAACTCATGTGTCCACCAGAGTTATGGGAACTTATGGATATTGTGCACCAGAATATGCAATGACTGGTCAGCTCACCTTAAAGTCAGATGTTTATAGCTTTGGAGTTGTTCTTCTTGAAATAATCACTGGCAGAAAAGCAATTGACAATTCAAGAGCTGCTGGGGAACACAATTTGGTCGCTTGGGCCCGGCCTTTGTTTAAAGATCGAAGGAAATTCTCACAGATGGCTGATCCCTTACTTCAAGGACAATACCCAGTTAGGGGATTATATCAAGCTCTTGCAGTTGCTGCTATGTGTGTTCAAGAACAACCAAACATGCGACCTCTAATAGCTGACGTTGTCACGGCTCTTTCTTATCTGGCTTCTCAGAAATACGATCCAGATACCCAGCCAGTCCAGACCTTGCGAACAGGCTCATCCACCCCACGTTCTAGACGAGAATTGTAA 3708 42.75 MEAASKTINPLVAFDHKRTRANVGRALWKVEISIQEMLFSSLSRLSLEADCRDAYGFAVRPQHVQRYREYANIYKEEEEERSDRWNLFLEQQLESSQLLVNGSLIEEDKKVHGNEASEQETEARTEKDVKGEDLSSVNSDSFDLSQNGVKKGKVPANTDAKSHRIQIWADIRPSLHSIEEMMSGRVRKKKGLSRNEHENGTRKLLPSIDEARSPKGMSEEDSEDEFYDVERSDPIQDTPSNDNASGHVIGSTGVVASSESLSPWKEELEVLVQGGVPMALRGELWQAFVGVRTRRVEKYYEELLAPESNSGNNTEQRSFHSDKPVTDSDLPRTFPGHPALDEGGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWTLMGIIDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVSGPWFLSIFMNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTASMGYQNVNETRLQELRNNHRPAVSFSIEERLKGLRTWKDSQGLASKLYSFKHDSKSMMIETKDKHTEGGLSRSESGSTNIDEILIPLTEDVEIDSVKDLQDQVEQLEQEVAELQRALSDKQEQEHAMLQVLMRVEQEQRVTEDARRFAEQDAEAQRYAAQVLQQKYEEATAALAQMEKRVVMAESMLEATLQYQTGQLKTQPSPRSSQPDSPSVRNSQEHQPDLPGRKINLLGRPFGFGWRDRSKSKSATADDSYDGKTPTADGSSDGKTIEHGMNATNSQEKETDGLHDKEGACVILVKYKDVTVKRGKGKKSYTGKVQYYSNSLSSPLSVPQFCTLSQRGNIAMSCFFCSGNSKKNGKKKPKDQISSTSDKFTVNTSFNVKKEGPKDGGSDHISAQTFTFRELVAATKNFRADCLLGEGGFGRVYKGRLESINQAVAIKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPPDKKRLDWNTRMRIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGESYNPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWARPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPNMRPLIADVVTALSYLASQKYDPDTQPVQTLRTGSSTPRSRREL 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2356696 2371897 + BLOR13214 Blo04g00302 59330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00302 1235 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 50 587 - -
Blo04g00302 1235 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 612 721 - -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 185 220 - -
Blo04g00302 1235 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 292 398 - -
Blo04g00302 1235 Pfam Protein tyrosine and serine/threonine kinase 935 1201 IPR001245 GO:0004672|GO:0006468
Blo04g00302 1235 MobiDBLite consensus disorder prediction 1215 1235 - -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 109 134 - -
Blo04g00302 1235 Pfam Rab-GTPase-TBC domain 279 486 IPR000195 -
Blo04g00302 1235 Gene3D Phosphorylase Kinase; domain 1 902 1006 - -
Blo04g00302 1235 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 405 518 IPR035969 -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 714 806 - -
Blo04g00302 1235 Gene3D - 399 539 - -
Blo04g00302 1235 SMART serkin_6 930 1207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo04g00302 1235 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 264 428 IPR035969 -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 307 330 - -
Blo04g00302 1235 Gene3D Transferase(Phosphotransferase) domain 1 1007 1223 - -
Blo04g00302 1235 CDD STKc_IRAK 936 1204 - -
Blo04g00302 1235 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 612 721 - -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 185 227 - -
Blo04g00302 1235 SUPERFAMILY Protein kinase-like (PK-like) 916 1218 IPR011009 -
Blo04g00302 1235 ProSiteProfiles TBC/rab GAP domain profile. 275 468 IPR000195 -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 714 738 - -
Blo04g00302 1235 ProSiteProfiles Protein kinase domain profile. 930 1207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo04g00302 1235 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 50 587 - -
Blo04g00302 1235 SMART tbc_4 272 492 IPR000195 -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 771 800 - -
Blo04g00302 1235 MobiDBLite consensus disorder prediction 109 160 - -
Blo04g00302 1235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1053 1065 IPR008271 GO:0004672|GO:0006468
Blo04g00302 1235 Coils Coil 607 644 - -
Blo04g00302 1235 ProSitePatterns Protein kinases ATP-binding region signature. 936 959 IPR017441 GO:0005524
Blo04g00302 1235 Coils Coil 677 704 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01149 Blo-Chr1:41796945 Blo04g00302 Blo-Chr4:2356696 0 dispersed
Blo02g00132 Blo-Chr2:1123577 Blo04g00302 Blo-Chr4:2356696 2.51E-14 dispersed
Blo04g00302 Blo-Chr4:2356696 Blo07g00186 Blo-Chr7:2334385 0 dispersed
Blo04g00640 Blo-Chr4:5577060 Blo04g00302 Blo-Chr4:2356696 1.27E-46 dispersed
Blo15g00459 Blo-Chr15:6960727 Blo04g00302 Blo-Chr4:2356696 4.29E-41 dispersed
Blo18g00434 Blo-Chr18:4788914 Blo04g00302 Blo-Chr4:2356696 4.90E-24 dispersed
Blo12g00852 Blo-Chr12:26794248 Blo04g00302 Blo-Chr4:2356696 2.44E-151 transposed
Blo12g00452 Blo-Chr12:22053100 Blo04g00302 Blo-Chr4:2356696 3.07E-09 wgd
Blo14g00145 Blo-Chr14:1084249 Blo04g00302 Blo-Chr4:2356696 7.53E-176 wgd
Blo03g01259 Blo-Chr3:38815338 Blo04g00302 Blo-Chr4:2356696 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84223 PF07714 PK_Tyr_Ser-Thr 1.30E-44 CL0016 Blo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00302 - - mnt:21400253 994.956