Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00306 ATGTTGGATCTTAACTTTGGTGTTACTGTTACTCATAGTGATTCAATGGAGGTCGAAGATTTCCCAGCTAATTCAGTCACTCAAATGGAAGATTCAGGCACTTCAAATTCCTCCATTGTTAACGCTGAAGAAGCTCTAGCTCCAAGTTATAGTGGAAAAGACGAAGATTCTTCAAACAACTCGTCTGGATTCATTTTCGACATCATGAGAAAACAGATAGAAAGCGATGGAGCGAGTTGGGTCGAAGATGAAAACCCCTCACCTGTACTACTCACGCAACCTCTTTTTCCGGTCGCCGCAAACGGGAGAGACTGGGATTTGGAGCTTCGGTTGGGATTAGCTGCCTCGGCAAGGCCTCCGTGGTTGAACTTGTCGTTTCCCGACTCCGGTGGTGGTCAAACGGAGCTCAAAAATTTTCCGCAAAAGCAACAGCTAGTGAGGAAAAGCCGGAGAGGTCCGCGATCTCGAAGCTCTCAGTACCGTGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCGCATATCTGGGATTGTGGGAAACAAGTATATTTGGGTGGATTTGACACTGCTCATGCTGCCGCTAGAGCATACGACAGAGCTGCTATTAAATTCCGAGGAATTGATGCTGATATCAACTTCAACACCAGCGATTACGACGAAGATATACAACAGATGATGGTCGTCGAGTACAATCGATCTATAATTGTGTTTATGAACAAGAACTTGACCAAGGAGGAATTTGTGTACATTCTTCGTCGCCATAGTAGCGGGTTTTCCCGGGGGAGCTCGAAATTTCAAGGTGCTATGTTTCGAAAGTGTGGGCAATGGGAGGGCAGGATGCTCGGAAAGAAGGTTTATGATCAGAAGTACCCTGGAAGCGATGATTTGTCCGATATTGTATCTGAGCCTGGCTCGAGGACTTCGAACAAGGAGATTAATCTAGATGCAATCAGAGGGAATGGGGATAATCTTGATCTGAGTCTTGGGATTTCACCAAATAATGCAGATGCTTTAATTGGAAATGGGAAAATGGGAGTCATCAACTGCCATTTTAATGGTGGGGAAAAGCTGAACGCAGAGAGAAGGAAGATGGACGGCTGTGATGGATCACGTGTGGATGGACGACAGCCTCAGATCGCTGCAGTGGCGTCACAGCAACCTTCTAATTTCCGGCCTTTGCCTCCTATCCAGGAAAGGATAGCAGAGAAGAGGAACGAAGGCGTTGTTGTGTCGTCTTCTTCGCCACAGAGTTTCACTAACTGGGCATGGCAACTGAATGAGAGTGGCAAAGTATCTCCTGTGCCAGTTTTCTCCATTGCAGCATCATCAGGATTCTCTTCCTTCGTTACTGTTGCTCCACCGCCACCCATCCCGTATAAACATCACATGAAAAATGGAAACTTGACGGATCATGTTGGCACTTGGCACCACGCTGTTTGGAATTGTCTGAGCTTTCAAAACTCTGCTGCCTACGCTGTCGAAGAAGAAATTTGTACGCTTTGTTCTGAAGGGTTGGGCGAAGCCCAAAGCGGATACGTTGCGCACCGTCGATTCTCAACTTCGGACCTTTCGTCATCTTCCAATTCTCTCTTCTTCTTCGTCGTCGTCGACTTCGACGTCCTCGTTGCTGCTCTCGCCTGTTCGTGCGGTTTTCAAACACGAGTTCGAAATGGAGGCCTTACTCTCTTTCTCTGTCTAAAAGCCTGGGATTCTGCTCCGATGTTGCTTCTTCATCTTCTTCGAGTTTCAGCTATGGAGCTGGAGATTCAGGAGGAGCGAATTTGGGATCGTAGCTTGGAGGAAGATGCTAGGCCCGCCATTGCCGTCAGAGCTTATTTCTTCTCCACGAGGTTTGTCGTCTGTTTCCCACATTTCATATTTTCACATTTGAGTAAGGGCTTGAATTATATGGCGGAGGCTCCGACGAGTCCAGCTCGTGGGAGCCACGAGAGTGGCGGCGAGCAGAGTCCAAGAACCGGAGTGCGAGAGCAAGACCGATATCTTCCTATCGCTAACATTAGCAGGATCATGAAGAAGGCGTTGCCTGCCAACGGCAAAATTGCCAAAGATGCCAAGGATACAGTCCAGGAATGCGTCTCCGAATTTATCAGCTTCATCACTAGCGAGGCCAGCGATAAATGCCAGAAAGAGAAGAGGAAGACAATCAATGGTGACGATTTGTTGTGGGCCATGGCAACGTTAGGATTTGAGGACTATATCGATCCGCTTAAGGTGTATCTAAATAGGTATAGAGAGGGTGATGCTAAAGGGTCTGCCAGAGGTGGTGATGACTCTGCTAAACGAGATGCAGTTGGCGTCCTCCCTAACCCAAATACACAGTTCCTACCACAAGGGTCGTTGAGCTACATCAATTCTCAACTTGTTCTTGACAAATTGGATACATGTTTCTCGTTATGGTTATCTAACTCATCTGTTTCACTTCTATGTGTTTGCTCATGA 2463 47.46 MLDLNFGVTVTHSDSMEVEDFPANSVTQMEDSGTSNSSIVNAEEALAPSYSGKDEDSSNNSSGFIFDIMRKQIESDGASWVEDENPSPVLLTQPLFPVAANGRDWDLELRLGLAASARPPWLNLSFPDSGGGQTELKNFPQKQQLVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNTSDYDEDIQQMMVVEYNRSIIVFMNKNLTKEEFVYILRRHSSGFSRGSSKFQGAMFRKCGQWEGRMLGKKVYDQKYPGSDDLSDIVSEPGSRTSNKEINLDAIRGNGDNLDLSLGISPNNADALIGNGKMGVINCHFNGGEKLNAERRKMDGCDGSRVDGRQPQIAAVASQQPSNFRPLPPIQERIAEKRNEGVVVSSSSPQSFTNWAWQLNESGKVSPVPVFSIAASSGFSSFVTVAPPPPIPYKHHMKNGNLTDHVGTWHHAVWNCLSFQNSAAYAVEEEICTLCSEGLGEAQSGYVAHRRFSTSDLSSSSNSLFFFVVVDFDVLVAALACSCGFQTRVRNGGLTLFLCLKAWDSAPMLLLHLLRVSAMELEIQEERIWDRSLEEDARPAIAVRAYFFSTRFVVCFPHFIFSHLSKGLNYMAEAPTSPARGSHESGGEQSPRTGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREGDAKGSARGGDDSAKRDAVGVLPNPNTQFLPQGSLSYINSQLVLDKLDTCFSLWLSNSSVSLLCVCS 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2399021 2405911 + BLOR13218 Blo04g00306 59334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00306 820 ProSitePatterns NF-YB/HAP3 subunit signature. 699 715 IPR003956 GO:0005634|GO:0006355|GO:0043565
Blo04g00306 820 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7-LIKE 24 465 - -
Blo04g00306 820 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 24 465 - -
Blo04g00306 820 MobiDBLite consensus disorder prediction 642 662 - -
Blo04g00306 820 ProSiteProfiles AP2/ERF domain profile. 159 215 IPR001471 GO:0003700|GO:0006355
Blo04g00306 820 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 668 732 IPR003958 -
Blo04g00306 820 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Blo04g00306 820 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Blo04g00306 820 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Blo04g00306 820 Gene3D Histone, subunit A 656 773 IPR009072 GO:0046982
Blo04g00306 820 CDD AP2 159 217 IPR001471 GO:0003700|GO:0006355
Blo04g00306 820 SUPERFAMILY Histone-fold 665 759 IPR009072 GO:0046982
Blo04g00306 820 PRINTS CCAAT-binding transcription factor subunit A signature 734 752 - -
Blo04g00306 820 PRINTS CCAAT-binding transcription factor subunit A signature 696 714 - -
Blo04g00306 820 PRINTS CCAAT-binding transcription factor subunit A signature 715 733 - -
Blo04g00306 820 SMART rav1_2 159 221 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00306 Blo-Chr4:2399021 Blo13g00740 Blo-Chr13:30192999 9.92E-122 dispersed
Blo12g00456 Blo-Chr12:22128268 Blo04g00306 Blo-Chr4:2399021 1.01E-76 wgd
Blo13g01099 Blo-Chr13:33141228 Blo04g00306 Blo-Chr4:2399021 2.87E-60 wgd
Blo13g00735 Blo-Chr13:30178003 Blo04g00306 Blo-Chr4:2399021 9.90E-93 wgd
Blo14g00149 Blo-Chr14:1129907 Blo04g00306 Blo-Chr4:2399021 3.43E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12233 PF00808 CBFD_NFYB_HMF 7.10E-27 CL0012 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00306 K09284 - jre:108997119 340.502