Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00330 ATGGAGATGGTTTCGGAAGAGGATGGTTTGAAACCGGCTGTCGTGAGTCAACTCGTCGACGCTGTGAAGGAGGTTATCGGTTTGACAGACTGCGACAATATCTGCAAGAAGATGTATGGGGACCTGCTTCGTAGGGTGCAGCTTTTGAGCCCTTTCTTTGATGAACTGAGGGACTTGGACGAGGAGCTTGGAGAAGAAGTCGTCAAGGGTTTGGAGTCGCTGAAAATTGCTTTGGATTCTGCTCTTGACCTTCTCCAGTCAGTCAATCGAGGAAGCAAGCTTTATCAGGCTTTGGAAATAGAGATTACTTGTGGAAAGTTTCATGATGTCACAGAACATATTGAAAAAGCACTATGCAGAATTCCTTTGGCTGACCTTGATCTATCAGATGAGGTTAGAGAACAGACTGAACTTGTACATGCTCAATTCAAACGAGCGAGCGGGAAAATCGACTTGCCTGATTTGCAATTATTTACTGATTTAGCCATAGTAGAGAACGATAAAGACCCCAACCCGGCAATAATGAGAAGACTTTCAGAAATGTTGCACCTTGAGACTATAGCTGATCTAAAAAAAGAGGCGTGTGCTTTCCATGATTTGGTCATCTTAAGTGGTGGAGATCTTGGAGAATCTTTTGGGAAAATGTCATCCCTCCTAAAGAAGCTAAATGATTACGTACAAACGAAAAATTCAAAAGTCCGTGAGCATGAAAGTGATCAAGGTTTTCTCAAACACAGATGTCCTGTTATCCCCGATGATTTTCGGTGCCCGATATCTCTTGAATTGATGAGAGATCCTGTCATTGTCTCCACTGGACAGACGTATGAAAGAGCTTGCATTCAAAAATGGTTGGACGCAGGACACAGAACCTGTCCAAAAACACAACTTTCCTTATCGCATATGGCTCTAACTCCTAACTACGCCTTGAAAAGTCTGATTGCTTTGTGGTGTGAGAGTAATGGCATTGAGCTAACCAAAAAACAAGGAAATGGCAGAAACAGAAAAGCTGGCCCCAGCCTTTCTGATTGCGACGAAGGTGCAATTGAGGTTTTACTCACAAAATTGAAGGACGGATCTCAAGAGCAGAAACGAGCTGCTGCAGGCGAGCTCCGTTTACTAGCAAAGAGGAACACAGATTATAGAGTTTGTATTGCAGAGACTGGGGCCATTCCTCTCCTCGTAAAACTCCTATCCTCAGACGATCCTCGAACCCAAGAACATGCTGTCACGTCTCTTTTAAACCTTTCCATTAATGACAGTAACAAAAGAACTATAGTAGAAGTTAGAGCTATACCATCTATAGTGGAAGTGCTGAAAAATGGGAGCATGGAGGCGAGAGAAAATGCAGCAGCCACACTTTTCAGTTTATCCGTAATAGATGAAAACAAAATGGCAATTGGAGGATCTGGGGCCATTCCGGCTCTTATTACCTTACTTTGTGATGGGTCTCCACGGGGAAAGAAAGATGCTGCAACTGCGATTTTCAATCTCTCAATCTATCAGGGAAACAAGGCAAGGGCTGTGAGGGCCGGAATCGTACCCCCACTTGTGAGTTTCATTAAAGAAGTTGGGGTTGGCATGGTGGATGAGTCACTGGCAATCATGGCCATTCTCTCAAGCCATCAAGAAGGGAAAGCCGCAATTGGTGAAGCCGAGGCAATCCCTGCTCTGCTTGAGGTTGTAAAAACAGGCTCTCCTCGAAACAGGGAAAATGCTACCGCCATACTGTGGTCATTGTGTGCTAACGATTTGAAGCAGTTGCAAACAGCCAGACAGCTTGGTGGAGAAAAAGTAATGAAAGATTTGTCAGAGAACGGCACTGATAGAGCAAAGAGAAAAGCCTTGAACATTTTGGAGCAGCTTCGGCGGTTGGAGGCGACTTCTACCTCGTGA 1893 44.59 MEMVSEEDGLKPAVVSQLVDAVKEVIGLTDCDNICKKMYGDLLRRVQLLSPFFDELRDLDEELGEEVVKGLESLKIALDSALDLLQSVNRGSKLYQALEIEITCGKFHDVTEHIEKALCRIPLADLDLSDEVREQTELVHAQFKRASGKIDLPDLQLFTDLAIVENDKDPNPAIMRRLSEMLHLETIADLKKEACAFHDLVILSGGDLGESFGKMSSLLKKLNDYVQTKNSKVREHESDQGFLKHRCPVIPDDFRCPISLELMRDPVIVSTGQTYERACIQKWLDAGHRTCPKTQLSLSHMALTPNYALKSLIALWCESNGIELTKKQGNGRNRKAGPSLSDCDEGAIEVLLTKLKDGSQEQKRAAAGELRLLAKRNTDYRVCIAETGAIPLLVKLLSSDDPRTQEHAVTSLLNLSINDSNKRTIVEVRAIPSIVEVLKNGSMEARENAAATLFSLSVIDENKMAIGGSGAIPALITLLCDGSPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLVSFIKEVGVGMVDESLAIMAILSSHQEGKAAIGEAEAIPALLEVVKTGSPRNRENATAILWSLCANDLKQLQTARQLGGEKVMKDLSENGTDRAKRKALNILEQLRRLEATSTS 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2614351 2616969 - BLOR13242 Blo04g00330 59358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00330 630 Pfam Armadillo/beta-catenin-like repeat 542 581 IPR000225 GO:0005515
Blo04g00330 630 Pfam Armadillo/beta-catenin-like repeat 378 416 IPR000225 GO:0005515
Blo04g00330 630 Pfam Armadillo/beta-catenin-like repeat 460 498 IPR000225 GO:0005515
Blo04g00330 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 323 IPR013083 -
Blo04g00330 630 Pfam U-box domain 250 320 IPR003613 GO:0004842|GO:0016567
Blo04g00330 630 CDD RING-Ubox_PUB 254 295 IPR045210 -
Blo04g00330 630 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 14 625 - -
Blo04g00330 630 SMART arm_5 418 458 IPR000225 GO:0005515
Blo04g00330 630 SMART arm_5 459 499 IPR000225 GO:0005515
Blo04g00330 630 SMART arm_5 377 417 IPR000225 GO:0005515
Blo04g00330 630 SMART arm_5 541 581 IPR000225 GO:0005515
Blo04g00330 630 SMART arm_5 500 540 IPR000225 GO:0005515
Blo04g00330 630 SMART Ubox_2 253 316 IPR003613 GO:0004842|GO:0016567
Blo04g00330 630 SUPERFAMILY RING/U-box 250 324 - -
Blo04g00330 630 SUPERFAMILY ARM repeat 342 621 IPR016024 -
Blo04g00330 630 PANTHER U BOX DOMAIN-CONTAINING 14 625 - -
Blo04g00330 630 Coils Coil 607 627 - -
Blo04g00330 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Blo04g00330 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Blo04g00330 630 Gene3D - 326 628 IPR011989 -
Blo04g00330 630 ProSiteProfiles U-box domain profile. 249 323 IPR003613 GO:0004842|GO:0016567
Blo04g00330 630 Gene3D - 13 124 IPR036537 GO:0007166
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00162 Blo04g00330 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01237 Blo-Chr3:38604917 Blo04g00330 Blo-Chr4:2614351 0 dispersed
Blo04g00330 Blo-Chr4:2614351 Blo14g00121 Blo-Chr14:881191 0 dispersed
Blo10g00673 Blo-Chr10:21604615 Blo04g00330 Blo-Chr4:2614351 1.57E-100 dispersed
Blo14g00034 Blo-Chr14:236931 Blo04g00330 Blo-Chr4:2614351 7.27E-64 dispersed
Blo16g00211 Blo-Chr16:4730995 Blo04g00330 Blo-Chr4:2614351 8.88E-39 dispersed
Blo17g00005 Blo-Chr17:44080 Blo04g00330 Blo-Chr4:2614351 4.67E-27 dispersed
Blo04g00330 Blo-Chr4:2614351 Blo03g01130 Blo-Chr3:37761378 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00330 - - csv:101221065 825.854