Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00334 ATGGCTGGAAACGAAGGGTATCGAATTTTCGTCGGAGGTTTGGCGTGGGATATTGATGAGCGTCAGCTCGAGAACGCGTTCAGCCGCTATGGCAGAGTGCTGGATTCCCAGATCATGTTGGAAAGAGATACTGGTCGCCCACGAGGTTTCGGGTTTATTACCTTTGCAGATCGTAGGGGAATGGATGATGCAATTAGGGAGATGAATGGAAGGGAGTTGGGTGACCGGACTATATCAGTGAACAAAGCTGAGCCCAAAATGGGTGATGATGTGGAGCACAGTAATAGGGGTCTCTACAGATCTGGAGGCAGAGAAAGCTACAGGGGAGGTGATAAGCCTGCTGGGGAAGATGATTGCTTTAAGTGTGGACGCCCTGGACATTGGGCTCGAGACTGTCCATCAAGCGGTGGGCGTGGTGGTTCATTTTCATCACGCCCTCGCTTTGGAGGGAATGGTGATCGTGGAGATCGCTTTGGTGAGCGTCCGCGTTATATAGAAGACCACTATGAGGAAGGACGATTTGGGGTTAGAGAGAATTTTGAAGGCAGAGATAACAGATATGGAAATCGTGATCGCTTTGTTAATGACAGGTATCCGGCGGGTGGAGATCACTTTGGTGGCAGCAGGTACAGTGGTGGGGACCGCTTTCTTGAAAATGGTCATGGTAGAGAGAGAGGCTACGAGAGGGAGGGTGGTCCACGTGGCGGCAATGATAGGTATGGGAGTGGAGGGCCAGTGCGCGAGGATAGAAAAAACTTCAGACATCGATCAGGATCAGGTCCTTACGACCGCCCTAGCCGCGCAGGCCGCCCGTCTTCCTTTGAAAGAACCGCCCGCGGGGGCCTCTCTGGTATCACTGATATTCAAACCCTTGCCATAAGATCTCTCACCAGCCGATGGTTTGTGATTTCTGCCTCGCTTCTAGTTATGTCTACCGCTGGAGCTACCTACATGTTTGCACTTTACTCCGGCGACATTAAATCCGCTCTGGGCTATGATCAAACCACGCTGAACCTTCTTAGTTTCTTCAAAGACGTAGGTGCCAACGTCGGAATTCTTTCCGGGCTTATCAACGAGGTCACTCCGCCGTGGGTGGTTCTCTCCATTGGGGCCGGACTTAACTTTTTCGGTTACTTCATGATTTGGCTCGCCGTAACGAAGAGAATCGAAACGCCGCAGATATGGCATATGTGTTCTTATATCTGCATCGGAGCAAATTCTCAGACTTTTTCAAACACTGGTTCGCTCGTCACCTGCGTGAAGAATTTCCCGGAGAGTCGAGGAGTTGTGCTCGGACTTTTGAAGGGCTATGTCGGGTTGAGCGGCGCTATCATTACGCAGCTCTACCATGGATTCTACGGCGAGGATACAAAATCTTTGATTTTGCTCATCGGGTGGCTTCCGGCAGCCATTTCCGTCGCTTTTCTTCGAACTATTCGGATCATGAAAGTTGTTCGACAGCCGAATGAACTCCAAGTTTTCTATAACATGCTTTACATTTCTCTGGGCCTCGCTGGATTTCTGATGATGATGATTATCATCCAGAAACAAACGCAGTTTAACGGGATCGAGTACGGAGGAAGTGCGGCTGCTGTTCTTTTTATGCTCTTTCTTCCTCTCGCAGTCGTCGTTTTCGAAGAGTATAAGATATTGAAATCGGAGAAGATGAAATCAGAAAATAATCACCCTTCTACTGAAACCGCCTTAGACATTACTTCTGCAAATCAAAATCAAGAACCAGTACTGAAAGAGAAAGATAACAAAAAATCCGGTGAAATTTCTTGCTGGAAGACCATCTTTAATCCACCTCAAAGAGGGGAAGACTTCACGATTCTTCAAGCACTCTTCAGTGCCGACATGTTTATTATCTTCTTCACAACTTTATGCGGAGTAGGAGGAACCCTCACCGCCATTGACAACCTGGGTCAAATTGGAGCTTCTCTAGGGTACCCTAAAAATAGCATAAGCACATTCGTCTCGCTCGTTAGCATATGGAATTATCTCGGCCGAGTCGTCGCCGGCTTCGTTTCGGAAATATTCCTAACCAAATACAAGTTCCCTCGCCCTCTCATGCTCTCTCTAACCCTTGTACTGTCCTGCTTAGGACATCTTCTTATTGCTTTCGACGTCCAGAATGGTCTCTACTTCGCGTCCATTATAATCGGGTTCTGCTTCGGAGCTCAATGGCCTTTAATTTTCGCCATAATATCGGAACTTTTCGGCCTCAAATACTACTCCACTCTCTACAATTTCGGGGGTGTAGCCAGTCCCATCGGGCTGTATGTCCTAAACGTGAAGGTAGCAGGCAATTTATACGACAAAGAAGGTAGAAGACAAATGGCCGCGCAGGGAATTACCAGAAAAAACAGGGAGGAGCTGAAATGCGTGGGAAGAGAGTGTTTTAGACTATCTTTCCTCATAATCACCGCTGTTACTTTGTTGGGTACTGCTGTTTCTCTGGTTTTAGTGATGAGGACGAAGAAGTTTTACAAGAGTGATATTTACAAGAAGTTTAGGGAAGAAGAAGACAGCAAGGCGAAGGTGACTGATGAGAATGAGATGGAGTTGGCCGGAAATGGGGTGGGACCTCATGAAATTAAGATGGGATAG 2610 47.74 MAGNEGYRIFVGGLAWDIDERQLENAFSRYGRVLDSQIMLERDTGRPRGFGFITFADRRGMDDAIREMNGRELGDRTISVNKAEPKMGDDVEHSNRGLYRSGGRESYRGGDKPAGEDDCFKCGRPGHWARDCPSSGGRGGSFSSRPRFGGNGDRGDRFGERPRYIEDHYEEGRFGVRENFEGRDNRYGNRDRFVNDRYPAGGDHFGGSRYSGGDRFLENGHGRERGYEREGGPRGGNDRYGSGGPVREDRKNFRHRSGSGPYDRPSRAGRPSSFERTARGGLSGITDIQTLAIRSLTSRWFVISASLLVMSTAGATYMFALYSGDIKSALGYDQTTLNLLSFFKDVGANVGILSGLINEVTPPWVVLSIGAGLNFFGYFMIWLAVTKRIETPQIWHMCSYICIGANSQTFSNTGSLVTCVKNFPESRGVVLGLLKGYVGLSGAIITQLYHGFYGEDTKSLILLIGWLPAAISVAFLRTIRIMKVVRQPNELQVFYNMLYISLGLAGFLMMMIIIQKQTQFNGIEYGGSAAAVLFMLFLPLAVVVFEEYKILKSEKMKSENNHPSTETALDITSANQNQEPVLKEKDNKKSGEISCWKTIFNPPQRGEDFTILQALFSADMFIIFFTTLCGVGGTLTAIDNLGQIGASLGYPKNSISTFVSLVSIWNYLGRVVAGFVSEIFLTKYKFPRPLMLSLTLVLSCLGHLLIAFDVQNGLYFASIIIGFCFGAQWPLIFAIISELFGLKYYSTLYNFGGVASPIGLYVLNVKVAGNLYDKEGRRQMAAQGITRKNREELKCVGRECFRLSFLIITAVTLLGTAVSLVLVMRTKKFYKSDIYKKFREEEDSKAKVTDENEMELAGNGVGPHEIKMG 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2632241 2638176 + BLOR13246 Blo04g00334 59362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00334 869 Pfam Nodulin-like 299 544 IPR010658 -
Blo04g00334 869 Gene3D - 2 114 IPR012677 -
Blo04g00334 869 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 282 848 - -
Blo04g00334 869 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Blo04g00334 869 PANTHER MFS TRANSPORTER 282 848 - -
Blo04g00334 869 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Blo04g00334 869 Gene3D - 115 144 - -
Blo04g00334 869 MobiDBLite consensus disorder prediction 130 160 - -
Blo04g00334 869 SMART rrm1_1 8 81 IPR000504 GO:0003723
Blo04g00334 869 CDD MFS_Mch1p_like 298 816 - -
Blo04g00334 869 SUPERFAMILY Retrovirus zinc finger-like domains 100 139 IPR036875 GO:0003676|GO:0008270
Blo04g00334 869 MobiDBLite consensus disorder prediction 86 114 - -
Blo04g00334 869 ProSiteProfiles Zinc finger CCHC-type profile. 119 134 IPR001878 GO:0003676|GO:0008270
Blo04g00334 869 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Blo04g00334 869 MobiDBLite consensus disorder prediction 216 235 - -
Blo04g00334 869 MobiDBLite consensus disorder prediction 181 198 - -
Blo04g00334 869 MobiDBLite consensus disorder prediction 181 279 - -
Blo04g00334 869 MobiDBLite consensus disorder prediction 243 261 - -
Blo04g00334 869 Pfam Zinc knuckle 119 134 IPR001878 GO:0003676|GO:0008270
Blo04g00334 869 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Blo04g00334 869 Gene3D MFS general substrate transporter like domains 615 832 IPR036259 -
Blo04g00334 869 SUPERFAMILY MFS general substrate transporter 297 831 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00813 Blo-Chr2:28708115 Blo04g00334 Blo-Chr4:2632241 1.87E-07 dispersed
Blo04g00334 Blo-Chr4:2632241 Blo04g00337 Blo-Chr4:2653655 0 dispersed
Blo13g00244 Blo-Chr13:10683805 Blo04g00334 Blo-Chr4:2632241 1.89E-28 dispersed
Blo04g00334 Blo-Chr4:2632241 Blo04g00335 Blo-Chr4:2649401 7.35E-48 tandem
Blo06g00216 Blo-Chr6:10128076 Blo04g00334 Blo-Chr4:2632241 4.42E-68 transposed
Blo06g01122 Blo-Chr6:34657908 Blo04g00334 Blo-Chr4:2632241 3.80E-11 transposed
Blo08g00469 Blo-Chr8:10657428 Blo04g00334 Blo-Chr4:2632241 3.66E-69 transposed
Blo14g00201 Blo-Chr14:1694346 Blo04g00334 Blo-Chr4:2632241 0 wgd
Blo04g00058 Blo-Chr4:486429 Blo04g00334 Blo-Chr4:2632241 7.37E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00334 - - mnt:21400048 843.573