Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00340 ATGGCTGCCCCAGTGAATCTTACTCTTCTTCATCAGCACCCGTACCCTGATGCTGTTTCTGAAGTTGTTCATCGGAGAGTACAACATTCACTATCCAGAAGAGAAATGCTGAGTCTCCAATCTAAGAACCAAGCCACTTGTCTCACTGGAAACCCAATCGACGACTGTTGGCGTTGCGACCAAAACTGGCAAACTAACCGGCAAAGGCTCGCCGACTGCGGCATTGGGTTCGGCCAAGACGCAATGGGAGGAAAAGGCGGCCAGATCTACACTGTCACTGACTCCTCCGATTCAAATCCGGCGAACCCAACTCCAGGAACTCTCCGGTACGCCGTCATCCAAGAAGAACCCCTATGGATCATCTTCGCCGGCGATATGACGATAAACCTAAAACACGAGCTTATTTTCAACAGTTTCAAAACCATCGACGGCAGGGGCGCCTCCGTTCACATTACAGGGGGTGGCTGCATAACCCTTCAGTACATATCAAACGTAATAATCCACAACATCAACGTCTACAATTGTAAACCTACAGGGAATACAAACATACGGTCGAGCCCAACCCACGTAGGATACCGTGGCAAATCAGACGGTGATGGAATCTCCATCTTCGGCTCCCACAAAATCTGGATCGACCATTGCTCCCTGTCACACTGCACGGACGGTCTGATCGACGCGATCATGGGGTCCACGGGAATAACTATTTCGAACAACTATTTCTCGCATCATGACGAGGTGATGCTATTGGGCCACAACGATGAGTATGCACCGGACTCCGGGATGCAGGTGACCATAGCTTTTAACCACTTCGGTGTGGCGCTGGTGCAGCGTATGCCTCGGTGTAGACGAGGGTATGTACACGTGGTGAATAATGATTATACGGAGTGGGAGATGTATGCTATCGGCGGTAGTGCTAACCCCACCATAAACAGTCAGGGGAATAGGTACACTGCTCCGGCTGACACCAATGCCAAAGAGACTTTTTTATTTAGGCCACCGAAAAAAGAGCGGAACTTTGAAATTGAGAGTTTGAATAAATGTGAAATTCCACCGCGAGGAGCCAGACACGGCTGGCGACTAAAAAAGACAGGTTGGGAAGTGGATGACAGCCAAAACCAGACAGAAAGTAGCGTAGGCTCGTGGATAAGAGAGAGTGGGAAGAAGGTAACGAGGCGTTTGGATACAGGTGAGGTGGAGTGGACGGACTGGAACTGGAGAACGGTGGGGGACATAATGGTAAACGGAGCATTTTTTGTGCCGTCAGGCGAGGGTCTTAGCACTCTGTACAGTAAAGCTTACAGTGTGGATCCAAAATCAGTCGGCCTGATTGATCAGCTCACCATCAACGCCGGTGTCTTTGGTGGGCCCAGAGATAATAGTAGAAGCACGGGATACAGCAGTGCCTCGACGAGTAATGGAGGGTCGTCGACGGGGGAAGGGGACCTTTTCGGAATGATCTTCGGGGGTGCTAATGATGGAGCAGTGGGTGCACCTGCAGCATCTTGGATTAGCTCTCTCTTTCAGTCTCTCCTAATGCTCTTAACTTTGAATTTTGCCACTCTCCTTCCCCAGTTGGGTTGTAGGAGTTAG 1590 50.31 MAAPVNLTLLHQHPYPDAVSEVVHRRVQHSLSRREMLSLQSKNQATCLTGNPIDDCWRCDQNWQTNRQRLADCGIGFGQDAMGGKGGQIYTVTDSSDSNPANPTPGTLRYAVIQEEPLWIIFAGDMTINLKHELIFNSFKTIDGRGASVHITGGGCITLQYISNVIIHNINVYNCKPTGNTNIRSSPTHVGYRGKSDGDGISIFGSHKIWIDHCSLSHCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHNDEYAPDSGMQVTIAFNHFGVALVQRMPRCRRGYVHVVNNDYTEWEMYAIGGSANPTINSQGNRYTAPADTNAKETFLFRPPKKERNFEIESLNKCEIPPRGARHGWRLKKTGWEVDDSQNQTESSVGSWIRESGKKVTRRLDTGEVEWTDWNWRTVGDIMVNGAFFVPSGEGLSTLYSKAYSVDPKSVGLIDQLTINAGVFGGPRDNSRSTGYSSASTSNGGSSTGEGDLFGMIFGGANDGAVGAPAASWISSLFQSLLMLLTLNFATLLPQLGCRS 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2674877 2677568 - BLOR13252 Blo04g00340 59368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00340 529 Gene3D - 50 351 IPR012334 -
Blo04g00340 529 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Blo04g00340 529 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Blo04g00340 529 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Blo04g00340 529 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Blo04g00340 529 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Blo04g00340 529 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Blo04g00340 529 PANTHER PECTATE LYASE 5 327 - -
Blo04g00340 529 PANTHER PECTATE LYASE 386 471 - -
Blo04g00340 529 Pfam Pectate lyase 133 314 IPR002022 -
Blo04g00340 529 PANTHER PECTATE LYASE 18-RELATED 386 471 IPR045032 GO:0030570
Blo04g00340 529 SMART amb_all 125 322 IPR002022 -
Blo04g00340 529 PANTHER PECTATE LYASE 18-RELATED 5 327 IPR045032 GO:0030570
Blo04g00340 529 SUPERFAMILY Pectin lyase-like 39 431 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00340 Blo-Chr4:2674877 Blo16g00243 Blo-Chr16:5643367 5.55E-157 dispersed
Blo13g00705 Blo-Chr13:29815337 Blo04g00340 Blo-Chr4:2674877 7.73E-59 transposed
Blo12g00487 Blo-Chr12:22639241 Blo04g00340 Blo-Chr4:2674877 0 wgd
Blo13g00704 Blo-Chr13:29814282 Blo04g00340 Blo-Chr4:2674877 0 wgd
Blo04g00057 Blo-Chr4:481433 Blo04g00340 Blo-Chr4:2674877 2.66E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00340 K01728 - mnt:21400038 636.336