Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00397 ATGGCGGATTCTGATATGGAAGCTCTCAACAAGGCTTTCTCAGGTCATGGAATTGACGAAAACTCACTGATATCGATACTCGGAAAATGGCATCCGGAGGAGAGGAAGACGTTCAGGAAGAGCACTCCGCATTTCTTCAAGGAGGACGAGCGTTCTTTCGAACGATGGGACGATCAGCGCGTTAAGCTCCTCAAACATGAATTCATGCGTTTCAAGAATGCAGTGGTGCTGTGGGCAATGCATCCGTGGGAAAGGGATGCTCGTCTAGCGAAGGAGGCATTGGTGAAGGCGGCGTACGGGATTCTTGTGGAGGTTGCATGCACCAGATCATCGGATGAGCTTTTGGGTGCCAGGCGGGCCTACCATTCCCTCTTCGATCATTCCATCGAGGAGGACGTCGCCAGTCACATCAACGGCAATGATCGCAAGCTTCTAGTTGCGCTGGTGAGCGCGTATCGATACGAGGGAGAAAAGGTGAAAGACGAGGCTGCGAAGTTGGAGGCTAAGACTCTGGCCCATGCATTCAAGCATTCTGAGAAGACCAGTCTCGTTGAAGACGATGAGGTTATTAGGATTCTATCTACCAGAAGCAAGTTTCATCTCCTTGCCGTCTACAGACACTACAAACAGATCACTGGCTCCACCATCGATGCGGACCTTGGTGCGAATGTGAGGTTGCAGGAGACTGTGCAGTGCTTGTGTGCCCCCCATAAATATTTCAGCAAGCTTGCTAATATAATATGGGGTGAACCTGGGGAGACTGGTGACCATATTGTGCCTTACCCTGAGGCAAGTGAGGATTACAGTGACAAGAAGGAACGGAATCAAGAAGCTGCTGGCAACAAGCCTACTGAACAAAAGACATCTGGGATTAGAAGAAAGCTCGATGACACGTATAATCTTAAAACTAGAGAAGGAATTTCTGGCTCGGGATTTGCAACAGCCTCTTGGGCTGACTTGTCTGCATCCAAAGCTGCCAAAACTAATCGGAACTCTATGGGCACTGAAGTTTCAAACAGGCTAACTGAAATTAGCAAATTTGATTCTTCAAGAGCAGGTCAACTTGAAAAGGATGCTGACATGTATAGCAGCACCCAGGAAAGTAAAGAACAGGGTGAATTTGTTGACTATGGTTGGGATAACATTGGAAGTTTTGATGATCTTGATAGAATTTTCAGCAACGATGATCAGTTATTTGGCAATATAAGTCTAGGTGATTCTGACGAACTATGGTCTTCTTCCAAAGATATGAATGTTACTGACAGCCAAGAAAAATCCTTCCCTAGTTTTGGGTCTGAAAGGAATGTGCCCAATCATGCAGATGTTAAAACCGAATATTTGCAACAAAACCAATTATATAAACTTGGCTGTGGGAAAGTACCCCAGGATTTGCAGAGGGCAAATGAAATTTTGGAGAAATTGGAATTTACTGGAGATAAAAGTGACCATGCAACGACAGAACAGACTGAATTAAAAATAGGGGGCAAAACTCCTGCTGCAACCTCTCATTTGGCCGCTGAAAATGTTCTGAACAGCAATAAGATCTCAGATAAAGCTTATAGGCAGAAAAAACTGTTAAAAGGCCGGAGAAAGATGGAGGTTGGTGAAACAAGAACAGTGCAAGATTTTTGTGGTAATTGGTCTTCGTCAACTCATCCACCTAATCAATTTGAGATAAATTTGGCGTCACCATCAATAAAATCTCCTCCATCAAGTCTCACTCAACACAGGCAGCTTCAAGGACCTCAATCTTTGCAATATCAGCACTTGTCCAATGCTTTTCTGCAACATACTGCATATGGAACTCTTGGAAATCCATATCCTTCCATGCCGGTGCTGTCTCATATTCAGCCAGGGGAACTTCAACATCAATCTTTACTCTCTGGTTACGACATTTCTCCAGGTCGCGTTAGTCAGACAAACAAACCAGTGGACTGCCCTGTGAACAGTCTGATCATGACTCCTCAGGAAAAAATTGAAAAGCTTAGAAGAAGGCAGCAAATGCAGGCAATGCTTGCGATTCAAAAACAACAGCAACAATTTGGAAACCAAGTCCCTTGTACCAGTCACTCTACCTCCCAAAAATGTCACGAAGAAACTCAAATTCAGAATTTTGAAAAATCTGATCTTGATGTTGAAGATATAAGCACCCTACCTGCCCAGGATTCAAAGCCTCATTTGGAACAAAATGACTCCAGTACAGTTTCTATGGCTGTGGATGATTATTCTGTGGAGGATAAAATCCTTTACCGGCTTCAAGATATTATCTCAAAGTTGGACATCAAAATCAGACTTTGTATGAGGGATAGCTTGTACCGTTTGGCTCAAAGTGCGATGCAGAGGCACTGTGGTAGTGATACAAGCAGTACAACTAAAAGCAGCAGGGACGAACATGAAGTTGGTATAAGTGGAGAAATCAATAGTCACAGCTGGTATGCCGGAATGCCTGACGTTGAAACAGAGACCAACCCAATTGATAGAACTGTTGCTCATTTGCTCTTTCACCGGCCTTTAGAGTTATCAGGAAAACAAGTGGATGGACCCCAGTCGCCTATTTTCACGAAGCTTATTCTAGAAAACAGAACGGGATCAGTGAACTCACCAAAGCGATGCTTGGCTGGAATTTCAAAGGAGAAACCATTTATTTCTTCTCAAGGATCAAAGGATTACTGTCCATCCGCGGAGCCACAGAACCTGGATGATTCTAGAAGTAGTCCTTGTGCTGACACTTCAGAAAATGCATCGCATAACAAGCCTGAACACCTTGCAACCATGGAGCAAGGTCGTGCGTCTGACGGTCTTGGAATGGTGGTGAAGCAGATGAAGAAGATAACTGAAGAAGCAGGCGATGAAGGTGGGAAGAGGAAGTGGAAAAGGAGAGGCACTTCCTCGTCTTCTGTTTTCATTAACAATCTCGACGATGGTTGTCTCATGCACATCTTCAGTTTCCTCTCTCCCATCCCAGATCGGTATAACTCCGCCCTCGTTTGCCACAGATGGCTTTACTTAGCTTGTCATCCTCGTTTGTGGTTAAGAGTAGACAGATCCCTCAAAGATTCATCCGAACCCAGTGTTTTCCCTAACATTGAGACAGCTGTAGCTGCAGCTAGGCCTGGAGATACAATTCTAATTGCTGCTGGTGGAAGTCATCCTGCTTCCAATATTCAAATTAAAAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGATGATACGACACTTGTCTGTCCTCGTGGAGCTGAAAGTGCATTAGAGTTCCTCTGCACGAGCAAACTGGCCAATCTAACAGTGAAGGCAGAGCTCGGGTGTTGCCTTCTTCACAAAAAAGGAAGACTAACCATTGATGGATGCATTCTTCAATGTGAATCAAACCCTCTAGATTACCTTTCCTGCCCAATCGTCAGCACTGCCAGTGGCAGTAATTCATTCCCCCCCGCAGTCAAGTCCACCCACTCGGACGGAGTTTCCGTTGCCCAAACCCGGATAGAAGGAGGGGCGAAAGCCGTTCTAACGAGTGGAGACTTGGCTTTGCAGCGGGTTCGAGTCATCTACGCTCGAACTTCTGTATTTTTCTGGTTTGACCACAATAAAACTATGGCTTCTGGAACTGGAATTCCATATTTTGAAGATTTGAGGAGTAAACCTGAGGTTGTTGACCCTCCTCAAAATGAAGATATGATGGATATTGGTGAAAACGTGAATGATCCTTCTCAAGGCGGCTCAAAACCCAACTTGACTGTTTCTAGCAGTGTTCGGGACCTGTTGGAATGTCCTGTGTGTTTAAATGCGATGTACCCTCCCATTCATCAGTGTTCAAATGGTCATACGCTGTGCTCTGGATGCAAGCCCAGGGTGCACAACCGGTGCCCCACTTGTAGGCATGAACTTGGCAATATTAGATGTCTGGCGCTAGAGAAGGTGGCTGCATCTCTAGAACTTCCATGTAAATACGAGAGCTTCGGTTGCTTGGGCATCTATCCTTATTACAGCAAGCTTAAACATGAATCCCAGTGTGTTTATAGGCCTTATAATTGTCCCTATGCTGGATCAGAATGTACAGTCATTGGTGATATACCTTATCTTGTGTCTCATCTAAAGGATGATCATAAAGTTGATATGCATACTGGCAGTACTTTCAACCATCGTTATGTCAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGCTGCTTTGGGCAGTACTTCTGTCTGCATTTTGAAGCATTTCAGCTAGGAATGGCTCCTGTCTACATAGCTTTTCTGCGGTTCATGGGTGATGATCACGAGGCAAAGAACTACAGCTACAGTCTAGAGGTTGGGGGAAATGGAAGAAAGATGATTTGGCAAGGAGTTCCGAGGAGTATCAGGGACAGTCATCGTAAAGTTCGAGACAGTTTTGATGGGCTCATCATCCAGCGCAACATGGCTCTCTTTTTTTCAGGGGGTGACAGGAAGGAGTTAAAGCTGAGGCTACAAGATGCAAGAACAACTTCGGGGGAAACAGAGGTGAAATTTCAAATGTCTAGAGATACTCCAGGTTCTATGTTGCGGTCAATGTGGACCAAGAAACTTTTTGTTGCTGCCCTCCCGCCGCTGCCTTGCCCAGGATCGCTGCCCGCCAAGCTGCCCGAAGCTGCAACTTGCCCGTGCTTCATCTTCTCTAGCAAACGAAGAGAAGCCCTAGCCGCTGCATCTCCCGCGACGAAGCCCGCCGAACGATCCGTCCACCGAAGACGTGCCCTGCTCGCTGTGACCTGCAACCCCGGCGACGATCTGAAGCCGCGAAGCGAAGCGCGCCGATCGTCTCTGTCCAGCGACAAAACCCACCGATCCGAAGCGCAGCGCCGTCGTCGAAACGTCTCCCGTGTTACGTCGTCGATCGTCGAAGGACAGAAGCTGCTGAACTGTCCGGCGAAGAACCGCGCGCCGTTCGTCGACAGACATTTTTTCTTTTCAGCTAACAAGATGCAAGGACAACTTCAGGGGAAACAGAGGAGAAATTTCAAGTGTCTAGAGATACTCCAGGTTTTCAGCTGCTTTGGGCAGTACTTCTGTCTGCATTTTGAAGCATTTCAGCTAGGAATGGCTCCTGTCTACATAGCTTTTCTGCGGTTCATGGGTGATGATCACGAGGCAAAGAACTACAGCTGCAGTCTGGAGCTACAAGATGCAAGGATAGCTTCAGGGCAATCAGAGGTGAAGTTTCAAGTGTCTAGAGATACTCCTAAGCTGAGGTCAATGGCTTACATTATGGACCAACTGAATCTTATTCAACTTCCCCGAGAAATAAGAAAGATCATCAACCTCCAACTTCTTGATATCAGTGAGACCGACCAATTGGAGGTGATGCCTTCAGGGATTGGTCTTCTCACGAAGCTTCAAATCTTGACAAAATATATTGTTGGAAAGAACCATGGGGGAGGAAACCCAGCTGCGATTCTGTTTTTCTACACGCCTGAGAAGCAAGAAAAGATAGCGAGGAAATGTTATCTTGAGGAAAATGGTCCAGTGACCAATGTTGATCCAATTGGAAATTCCCCTGTGATCATCAAAAAGGATTTGCTGGAAAGGATTGCTCCCACCTGGGTGAATGTGTCCTTGAAAATGAAAGAGGATCCTGAGACAGATACGGAGTTCGGATGGGTGATTGAAATTCCCCCGTGGGATTTGGAAATTGAAAATAAGTTCATTATTCATTACACATACGGATGTGATTACAACTTAAAAGTTTGGGTGACGCTTGTGAAGATGGTGAATGATGCTACAGCCAATATACCCAACTGGGATACACTATAA 5817 45.75 MADSDMEALNKAFSGHGIDENSLISILGKWHPEERKTFRKSTPHFFKEDERSFERWDDQRVKLLKHEFMRFKNAVVLWAMHPWERDARLAKEALVKAAYGILVEVACTRSSDELLGARRAYHSLFDHSIEEDVASHINGNDRKLLVALVSAYRYEGEKVKDEAAKLEAKTLAHAFKHSEKTSLVEDDEVIRILSTRSKFHLLAVYRHYKQITGSTIDADLGANVRLQETVQCLCAPHKYFSKLANIIWGEPGETGDHIVPYPEASEDYSDKKERNQEAAGNKPTEQKTSGIRRKLDDTYNLKTREGISGSGFATASWADLSASKAAKTNRNSMGTEVSNRLTEISKFDSSRAGQLEKDADMYSSTQESKEQGEFVDYGWDNIGSFDDLDRIFSNDDQLFGNISLGDSDELWSSSKDMNVTDSQEKSFPSFGSERNVPNHADVKTEYLQQNQLYKLGCGKVPQDLQRANEILEKLEFTGDKSDHATTEQTELKIGGKTPAATSHLAAENVLNSNKISDKAYRQKKLLKGRRKMEVGETRTVQDFCGNWSSSTHPPNQFEINLASPSIKSPPSSLTQHRQLQGPQSLQYQHLSNAFLQHTAYGTLGNPYPSMPVLSHIQPGELQHQSLLSGYDISPGRVSQTNKPVDCPVNSLIMTPQEKIEKLRRRQQMQAMLAIQKQQQQFGNQVPCTSHSTSQKCHEETQIQNFEKSDLDVEDISTLPAQDSKPHLEQNDSSTVSMAVDDYSVEDKILYRLQDIISKLDIKIRLCMRDSLYRLAQSAMQRHCGSDTSSTTKSSRDEHEVGISGEINSHSWYAGMPDVETETNPIDRTVAHLLFHRPLELSGKQVDGPQSPIFTKLILENRTGSVNSPKRCLAGISKEKPFISSQGSKDYCPSAEPQNLDDSRSSPCADTSENASHNKPEHLATMEQGRASDGLGMVVKQMKKITEEAGDEGGKRKWKRRGTSSSSVFINNLDDGCLMHIFSFLSPIPDRYNSALVCHRWLYLACHPRLWLRVDRSLKDSSEPSVFPNIETAVAAARPGDTILIAAGGSHPASNIQIKKPLCLIGGGELPDDTTLVCPRGAESALEFLCTSKLANLTVKAELGCCLLHKKGRLTIDGCILQCESNPLDYLSCPIVSTASGSNSFPPAVKSTHSDGVSVAQTRIEGGAKAVLTSGDLALQRVRVIYARTSVFFWFDHNKTMASGTGIPYFEDLRSKPEVVDPPQNEDMMDIGENVNDPSQGGSKPNLTVSSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYESFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPYLVSHLKDDHKVDMHTGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDHEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRLQDARTTSGETEVKFQMSRDTPGSMLRSMWTKKLFVAALPPLPCPGSLPAKLPEAATCPCFIFSSKRREALAAASPATKPAERSVHRRRALLAVTCNPGDDLKPRSEARRSSLSSDKTHRSEAQRRRRNVSRVTSSIVEGQKLLNCPAKNRAPFVDRHFFFSANKMQGQLQGKQRRNFKCLEILQVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDHEAKNYSCSLELQDARIASGQSEVKFQVSRDTPKLRSMAYIMDQLNLIQLPREIRKIINLQLLDISETDQLEVMPSGIGLLTKLQILTKYIVGKNHGGGNPAAILFFYTPEKQEKIARKCYLEENGPVTNVDPIGNSPVIIKKDLLERIAPTWVNVSLKMKEDPETDTEFGWVIEIPPWDLEIENKFIIHYTYGCDYNLKVWVTLVKMVNDATANIPNWDTL 1938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3223679 3261450 - BLOR13309 Blo04g00397 59425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00397 1938 Pfam Annexin 172 220 IPR018502 GO:0005509|GO:0005544
Blo04g00397 1938 Pfam Annexin 102 148 IPR018502 GO:0005509|GO:0005544
Blo04g00397 1938 ProSiteProfiles Zinc finger RING-type profile. 1258 1294 IPR001841 -
Blo04g00397 1938 MobiDBLite consensus disorder prediction 1593 1629 - -
Blo04g00397 1938 PANTHER PROTEIN LNK1 241 887 IPR039928 GO:0006355|GO:0007623
Blo04g00397 1938 SUPERFAMILY Pectin lyase-like 1009 1206 IPR011050 -
Blo04g00397 1938 SUPERFAMILY F-box domain 958 1027 IPR036047 GO:0005515
Blo04g00397 1938 PANTHER PROTEIN LNK2 241 887 - -
Blo04g00397 1938 Gene3D Annexin 148 240 IPR037104 GO:0005509|GO:0005544
Blo04g00397 1938 SUPERFAMILY Annexin 3 245 IPR037104 GO:0005509|GO:0005544
Blo04g00397 1938 Gene3D - 970 1010 - -
Blo04g00397 1938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1310 1366 IPR013083 -
Blo04g00397 1938 CDD Sina 1372 1498 - -
Blo04g00397 1938 MobiDBLite consensus disorder prediction 263 280 - -
Blo04g00397 1938 MobiDBLite consensus disorder prediction 257 295 - -
Blo04g00397 1938 Pfam Seven in absentia protein family 1300 1497 IPR018121 GO:0005737|GO:0006511|GO:0007275
Blo04g00397 1938 Pfam Seven in absentia protein family 1675 1731 IPR018121 GO:0005737|GO:0006511|GO:0007275
Blo04g00397 1938 Gene3D Annexin 81 147 IPR037104 GO:0005509|GO:0005544
Blo04g00397 1938 MobiDBLite consensus disorder prediction 882 927 - -
Blo04g00397 1938 SUPERFAMILY RING/U-box 1252 1298 - -
Blo04g00397 1938 Gene3D Annexin 1 80 IPR037104 GO:0005509|GO:0005544
Blo04g00397 1938 MobiDBLite consensus disorder prediction 882 920 - -
Blo04g00397 1938 ProSiteProfiles Annexin repeat profile. 81 150 IPR018502 GO:0005509|GO:0005544
Blo04g00397 1938 ProSiteProfiles Zinc finger SIAH-type profile. 1311 1371 IPR013010 GO:0008270
Blo04g00397 1938 MobiDBLite consensus disorder prediction 1599 1626 - -
Blo04g00397 1938 SMART annex3 99 148 IPR018502 GO:0005509|GO:0005544
Blo04g00397 1938 SMART annex3 184 233 IPR018502 GO:0005509|GO:0005544
Blo04g00397 1938 CDD RING-HC_SIAHs 1256 1294 - -
Blo04g00397 1938 Pfam F-box-like 976 1014 IPR001810 GO:0005515
Blo04g00397 1938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1221 1309 IPR013083 -
Blo04g00397 1938 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1367 1499 IPR008974 GO:0005515
Blo04g00397 1938 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1667 1772 IPR008974 GO:0005515
Blo04g00397 1938 SUPERFAMILY TRAF domain-like 1311 1496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00397 Blo-Chr4:3223679 Blo15g00087 Blo-Chr15:726299 8.62E-18 dispersed
Blo13g00645 Blo-Chr13:29077543 Blo04g00397 Blo-Chr4:3223679 3.88E-41 dispersed
Blo04g00397 Blo-Chr4:3223679 Blo04g00400 Blo-Chr4:3282869 3.75E-58 proximal
Blo04g00397 Blo-Chr4:3223679 Blo04g00398 Blo-Chr4:3265587 2.35E-33 tandem
Blo01g01397 Blo-Chr1:52377294 Blo04g00397 Blo-Chr4:3223679 2.02E-38 transposed
Blo08g00129 Blo-Chr8:1368837 Blo04g00397 Blo-Chr4:3223679 1.72E-43 transposed
Blo13g00267 Blo-Chr13:12914708 Blo04g00397 Blo-Chr4:3223679 1.93E-07 transposed
Blo13g00641 Blo-Chr13:28959450 Blo04g00397 Blo-Chr4:3223679 5.41E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00397 - - qsu:111991752 716.457