Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00402 ATGGAGACCCGGCAACCAACTTCTGATCGTAATGGTGTCTCAGGTGTCATAACTTTTTCCCCCGAAATAATATTGATTTTTTCGAATTACTGTAAAGTTTTATCAGTGAAGCTAGATGAGTGGAGTGATGAACAAGTTGATTCAATGATAAATAAGGGTGGTAATACTACAGTAAACAAGAAGTATGAAGCTTGCATCCCAGATAGCCAGAAAAAACCAAAACCGGAATCAAGTATAGAAGAACGATGTGATTTTATTAGAAACAAATATGAGCTGCTAAAATTTTTGAGCCAGGAAGATCAACCAAAGTCTCACAAAAGGAATTCATCTTCTTCCCAAGTTTCTGTAAGCAATAGTTCTACACAAGAGAAGAAACAATATGAAAAGCAAGCAACGAAACATCGCATTGGGAATGCATTTAGAAACAGCTGGGGAAGGAAAGATTCTGAGTACAAGATATCTAAGAAGACCAACTCCTTGGTAGCAAGTAATTCAATGGCAGGAATGGTTGAATTTGTTGGCTTGATCAAGGTCAATGTAGTGAGAGGCACCAATCTAGCAGTCAGAGACGTGATTACAAGCGACCCTTATGTGATTCTCACATTGGGCCATCAATCCGTGAAGACGCGAGTGATCAAGAGTAATCTCAATCCAGTCTGGAACGAGAGCCTAATGCTTTCAATTCCAGAGCACATTCCTCCTCTAAAAATTCTTGTTTACGACAAGGACACGTTTTCAACTGATGACTTCATGGGGGAGGCAGAAATCGACATTCAGCCACTTCTAACAGCAGCCAAGGCGTGCGAAACTTCTACAATCCACGAGTCGATTCAGCTCGGGAAGTGGATTGCGAGCAAAGATAACACCCTTGTAAAAGATGGAGTAATCAACCTTATAGATGGAAGGGTGAGACAGGACATCTCCCTCCGTCTAGAAAACGTCGAGAGGGGCGTGCTAGAGATGGAGCTCGAATGCGTTCCTCTCTCTCAATAG 993 41.79 METRQPTSDRNGVSGVITFSPEIILIFSNYCKVLSVKLDEWSDEQVDSMINKGGNTTVNKKYEACIPDSQKKPKPESSIEERCDFIRNKYELLKFLSQEDQPKSHKRNSSSSQVSVSNSSTQEKKQYEKQATKHRIGNAFRNSWGRKDSEYKISKKTNSLVASNSMAGMVEFVGLIKVNVVRGTNLAVRDVITSDPYVILTLGHQSVKTRVIKSNLNPVWNESLMLSIPEHIPPLKILVYDKDTFSTDDFMGEAEIDIQPLLTAAKACETSTIHESIQLGKWIASKDNTLVKDGVINLIDGRVRQDISLRLENVERGVLEMELECVPLSQ 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3293491 3297075 + BLOR13314 Blo04g00402 59430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00402 330 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 29 330 IPR044518 GO:0005096|GO:0005543
Blo04g00402 330 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 268 IPR035892 -
Blo04g00402 330 MobiDBLite consensus disorder prediction 107 125 - -
Blo04g00402 330 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 29 330 - -
Blo04g00402 330 CDD C2_ArfGAP 173 317 - -
Blo04g00402 330 Gene3D C2 domain 173 327 IPR035892 -
Blo04g00402 330 ProSiteProfiles C2 domain profile. 156 271 IPR000008 -
Blo04g00402 330 Gene3D Arf GTPase activating protein 25 105 IPR038508 -
Blo04g00402 330 Pfam Putative GTPase activating protein for Arf 30 97 IPR001164 GO:0005096
Blo04g00402 330 Pfam C2 domain 175 267 IPR000008 -
Blo04g00402 330 SMART C2_3c 175 270 IPR000008 -
Blo04g00402 330 MobiDBLite consensus disorder prediction 98 132 - -
Blo04g00402 330 SUPERFAMILY ArfGap/RecO-like zinc finger 30 96 IPR037278 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00402 Blo-Chr4:3293491 Blo08g00256 Blo-Chr8:3265436 7.17E-92 dispersed
Blo13g00639 Blo-Chr13:28948742 Blo04g00402 Blo-Chr4:3293491 3.47E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00402 K12486 - csv:101221541 462.225