Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00411 ATGTTTCAAGGGGATGGATCATCATCTTCATCAGTGACAACACCAACTCTGCTCTTCCCATGGGCCATATCTCCAGGGATTGGATCACCATACCCGTTTCTGAGAGAGCTCAAATCAGAAGAAAGAGGACTTTGTTTGATTAATCTTCTCCTCGCCTGTGCTAACCATGTTGCAGCTGGCCATATGGACTATGCAAATATTGGGCTTGAGCAGATTTCCCACCTTGCCTCTCCCGATGGTGACACTATGCAGCGAATTGCCGCTTATTTCACAGAAGCACTTGCCGATCGAGTTCTCAAAGCTTGGCCTGGTTTACACAAAGCTCTTAATTCGACCAAAATATCTTCAGTTTCAGAGCAAATTTTTGTCCGAAGACTCTTCTTTGAAATCTGCCCCTTCTTCAAGCTGGCATATCTGATCACAAACCAGGCGATTGTAGAAGCAATGGAAGGAGAAAAGATGATTCATATTATCGATTTTAATTCTTTTGAGCCCGCCCAGTGGATTAATCTTCTTCAGACATTGAAGGAGCGGCCGGAAGGGCCACCCCATGTGAGAATTACTGGGATTCATGAGCAGAAAGAAGTGCTGGAACAAATGGCTATCCGGTTGAACGACGAAGCGGAAAAATTAGACATTCCCTTTCAGTTCATTTCAATAGTGAGCAGATTAGAAAACCTAGATTTTGAAAGTTTGCGTGTGAAGACTGGCGAAGCACTTGCAGTCAGCTCTGTTCTAGAGCTTCACTCTCTTTTGGCCAAAGACGACGAGAGAAAAAGTTCACCATTGGCTTCCACCAATATTCATAAAATTTTACACGTTAAACAGCGAACTTTGGGAGAGTGGTTAGAGACAGACTCGATGCCGCTTTTCAGCAGTCCCGATTCGGCATCCACATCATCCCCAATGTCGCTAAGTCCTTCACAGAAGATGGGAAGTTTCCTAAACGCACTTTGGGGACTTTCACCGAAAATAATGGTAATAACCGAGCAAGAATCTAACCTCAATGGGCGTAATTTAATGGAGAGGGTCAGGGAAGCTTTAAACTTCTATGCAGCTTTGTTCGATTGTCTAGAATCAACGGTCTCTAGATCATCGCTGGAGAGACAGAAGGTCGAGAAGATGCTATTTGGAGAAGAAATCAAGAATATCATTGCATGTGAGGGAGCTGAGAGGAAAGAAAGGCATGAGAAGCTTGAGAAATGGATTTTACGGCTTGAAGTTGTAGGGTTCGGAAGGGTGGCCTTAAGCGACCATGGCAGGTTGCTGGCCGGTAAGCTGTTGCAGACCAATGGCTATGATGGGTATAAGATTAAGGAAGACAATGGATGTTTGTTTATCTGTTGGCAGGATAGGCCACTTTTCTCTGTCTCAGCTTGGAGGTTTCGGAGGAATGACTAA 1401 44.54 MFQGDGSSSSSVTTPTLLFPWAISPGIGSPYPFLRELKSEERGLCLINLLLACANHVAAGHMDYANIGLEQISHLASPDGDTMQRIAAYFTEALADRVLKAWPGLHKALNSTKISSVSEQIFVRRLFFEICPFFKLAYLITNQAIVEAMEGEKMIHIIDFNSFEPAQWINLLQTLKERPEGPPHVRITGIHEQKEVLEQMAIRLNDEAEKLDIPFQFISIVSRLENLDFESLRVKTGEALAVSSVLELHSLLAKDDERKSSPLASTNIHKILHVKQRTLGEWLETDSMPLFSSPDSASTSSPMSLSPSQKMGSFLNALWGLSPKIMVITEQESNLNGRNLMERVREALNFYAALFDCLESTVSRSSLERQKVEKMLFGEEIKNIIACEGAERKERHEKLEKWILRLEVVGFGRVALSDHGRLLAGKLLQTNGYDGYKIKEDNGCLFICWQDRPLFSVSAWRFRRND 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3372427 3373827 - BLOR13323 Blo04g00411 59439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00411 466 ProSiteProfiles GRAS family profile. 37 461 IPR005202 -
Blo04g00411 466 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 1 463 - -
Blo04g00411 466 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 463 IPR005202 -
Blo04g00411 466 Pfam GRAS domain family 46 461 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00972 Blo-Chr3:35821317 Blo04g00411 Blo-Chr4:3372427 0 dispersed
Blo04g00411 Blo-Chr4:3372427 Blo16g00714 Blo-Chr16:27676282 7.23E-68 dispersed
Blo04g00411 Blo-Chr4:3372427 Blo01g00753 Blo-Chr1:10017385 1.51E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12247 PF03514 GRAS 9.40E-135 CL0063 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00411 - - cmo:103489486 717.998