Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00426 ATGTCTAATTCGGAAGGTGGTAATAACGGCGTCGTCAACGGCGCTTTAATTGACCCTCAGAGACAACAGCAGCAGCCAAATGGAGCGCTTGTTGTCAAAAAGCCGCCCTCCAAAGACCGACACAGTAAGGTCGACGGTCGAGGTCGCCGTATTCGGATGCCGATCATTTGCGCCGCTCGTGTGTTTCAGCTTACTAGAGAGCTTGGACACAAGTCCGATGGTCAGACCATCGAGTGGCTTCTACGGCAAGCTGAGCCTTCGATCATAGCTGCAACGGGAACTGGTACTACTCCCGCCAGCTTCTCTTCCGTCTCCGTATCCGTCAGAGGCGGCGGCGTCGGTTCGAGTTCGCTCTCTTCCTCTTCCACTTCGTCCTCTCTATCCCTTTCTCGGCCCCAGGCCTTCTCCGGACCCACCCCCTTTATTCTTGGTAAACGTGTAAGAACCGACGACGACGGAGGAGCTGGAGCTAAGGACGAAGTCGTATCCGTTGGTCCCACAGTGGGCTCCATAGTGGGTCCCTCCGCCGCCGGTGGATACTGGGCCATTCCGGCCAGGCAGGACTTTGGGCAGATTTGGAGCTTTGCTACGGGGACGGCAGGTCCGGAATTGATTCACCCTTCCGCGGTCACTCAGCAGGGTTCGCTATTTGTTCAGCAGCAGCAGACGATTGGAGAGGCTTCGGCGGCACGGGTGGGGAATTATCTTCCGGGACATTTGAATTTACTGGCTTCGTTATCAGGTGGAACCGGCAATTCAGGTCGGAGAGAAGATGACCAA 780 56.15 MSNSEGGNNGVVNGALIDPQRQQQQPNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGGVGSSSLSSSSTSSSLSLSRPQAFSGPTPFILGKRVRTDDDGGAGAKDEVVSVGPTVGSIVGPSAAGGYWAIPARQDFGQIWSFATGTAGPELIHPSAVTQQGSLFVQQQQTIGEASAARVGNYLPGHLNLLASLSGGTGNSGRREDDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3495247 3496026 + BLOR13338 Blo04g00426 59454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00426 260 MobiDBLite consensus disorder prediction 34 49 - -
Blo04g00426 260 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Blo04g00426 260 MobiDBLite consensus disorder prediction 1 30 - -
Blo04g00426 260 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 258 - -
Blo04g00426 260 MobiDBLite consensus disorder prediction 112 132 - -
Blo04g00426 260 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Blo04g00426 260 MobiDBLite consensus disorder prediction 1 49 - -
Blo04g00426 260 Pfam TCP family transcription factor 37 121 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00426 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 331.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00426 Blo-Chr4:3495247 Blo16g01121 Blo-Chr16:39702350 5.03E-37 dispersed
Blo04g00426 Blo-Chr4:3495247 Blo04g00768 Blo-Chr4:7327486 7.95E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00426 . 35 259 TCP Transcription Factor Family AT5G23280 51.7 2.3e-50 196.1
Blo04g00768 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 81.7 5.6e-40 162.5
Blo10g00401 . 1 284 TCP Transcription Factor Family AT3G27010 53.0 5.0e-66 248.4
Blo11g00611 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 3.8e-58 222.2
Blo17g00570 . 1 272 TCP Transcription Factor Family AT3G27010 50.2 1.1e-57 220.7
Blo04g00426 . 8 259 TCP Transcription Factor Family AT5G08330 51.8 4.9e-58 221.5
Blo06g01211 . 26 126 TCP Transcription Factor Family AT5G60970 76.5 1.3e-38 157.5
Blo13g00343 . 8 191 TCP Transcription Factor Family AT2G31070 53.8 8.3e-41 164.9
Blo13g00346 . 8 191 TCP Transcription Factor Family AT2G31070 53.3 1.1e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12250 PF03634 TCP 2.10E-32 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00426 Blo_Chr04 FPKM 6.560577 7.279409 7.482161 8.132733 16.811106 16.503315 19.331936 11.691818 10.803923 11.769744