Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00447 ATGGCGGTATTGATTGCGGTACCCGGCGTAGCTGCTGCAGCTCCTCTAATTGTTACGACCCCCTTGCGAAATAATCGGTCTTCAGGTGCCCCATTTGCATCCAAACCATGTTTGTCGACTGGGCTTTGTGGCTGTAAAAATTGCTTCTCTTTCTCCACTGCACGAGTTATTCGGGTAAATAGCGTTGAATATTCCCGAGATGGTGCCGCCGGAGAAGAAGATGATGATGAAGTGACTGGAGTATTAACCTCTCTTAGAACCATTTACAACGACATTCTCATAGTCGACACCGTCAAGTCAAGAGCGCTGCTCCTCGACTCTAAGCATAATGTTCACAGCATTTTTTACAAGGAGCAGAAATGGACTGGTTCGTATTGGGATGAATTTGCTAGCTTGCCAGCTATAGTTCCAAAAGGACCTATTGCTATCTTTGGTCTGGGTGGTGGAACCACTGCTCATTTGATACTTTCCACATGGCCCTCATTACAGCTTGAAGGCTGGGAAATTGATGAAATTTTGATTGATCAAGCAAGATACTATCTTGGGCTATCTGATCTTGAGAAGCATACTGAAGCTGGTGGCATACTTAATGTTCACATTGGGGATGTCCTTGATCCCTCAGCTAGTATTTCTGGAGGATATGCTGGAATCGTTGTCGACTTATTTTCCGATGGAGATGTCCTCCCGCAGTTACAAGAGGTTGAGACATGGCTGGATTTGAAAGATAGATTGATGCCCGATGGACGGCTAATGGTTAATTGTGGCGGAAATGACGGAGCACCCAGTGGCACAGATAGAAACCTTAATCCTCAAACATCATCTGATGACACTTGGGTGGAAAATTCAACTATAGAAGCATTATCCAAAGCATTTCCTGGACAATTAAGCTGGAAGAAATTGGGAAAGGAGAATGGTGCAAATTTCCTTGCAATAACAGGATCTTTTCCGGATTTGACTGCATGGGCTGATGTAGTCCCACATCCCCTAAAGGAAAATGTGATGCAGTGGAGACCTTGTCTATTGCATGCTTTCTCAGAACTTTCTTTATACCAGTCGCCGGAAATAACTCCTTACCCTGATTCATTACTTACCCATGATTGCGCGTTCTTTCGTTGCTACGCAGAGAAATGCAGAATCGGAAGTGGGCAAGAGAGTGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATATCCAACTGGAACTCGAACGAATAGGGCAACCACGGCTGGGTTCTGGAAGGCTACTGGGAGGGACAAGCCTATCCATGTCCCTGAATATTCTAAGAAGATCGGCATGAGAAAGACCCTCGTCTTCTACACCGGCAGAGCTCCTCGCGGCCACAAAACAGATTGGATCATGCATGAATATCGCCTTGACGATCAAAACAGTGATCAACTTCAGGAGGAAGGCTGGGTAGTCTGTAGGGTTTTCAAAAAGAAAAACTATAGCCGAACCTTCCTACCAGAATCTTCTCAAGAGAACTCGAATAACCAGAAGGGAAGTACATTTTCAGGCCAATTAATCCTAGAGACGACGAAACATAATCAAATTCAAGCTGCGTCGCAAGACTATGGCTTCGATACCTCCCTGCAACTGCCCCAGCTATTCAGCCCAGAATCAGTCGTCGCAGCTCCGTCTTTCACCTCTTCGATATCTCTGAACACGACGATGGGGTCAATTGGGTATCCTCAATTCTGTAGAAGCTCGCAAGCGGAAAGGTACGGGGATTGGTCGTTTTTGGACAAGCTGCTAGCTTCCAACAGTGGAGTGGATCAGCAAAGCCTGAGTAAAGCGGTACCTTTCCACCACGTAGTAGATTCAACCCAGAATTTGCTGTTCCAATACCTTGGAGCAGGAAGTAGTTGCACTGAGATTGACGTTTTGAAATTTCCAAGATAG 1899 45.6 MAVLIAVPGVAAAAPLIVTTPLRNNRSSGAPFASKPCLSTGLCGCKNCFSFSTARVIRVNSVEYSRDGAAGEEDDDEVTGVLTSLRTIYNDILIVDTVKSRALLLDSKHNVHSIFYKEQKWTGSYWDEFASLPAIVPKGPIAIFGLGGGTTAHLILSTWPSLQLEGWEIDEILIDQARYYLGLSDLEKHTEAGGILNVHIGDVLDPSASISGGYAGIVVDLFSDGDVLPQLQEVETWLDLKDRLMPDGRLMVNCGGNDGAPSGTDRNLNPQTSSDDTWVENSTIEALSKAFPGQLSWKKLGKENGANFLAITGSFPDLTAWADVVPHPLKENVMQWRPCLLHAFSELSLYQSPEITPYPDSLLTHDCAFFRCYAEKCRIGSGQESEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIHVPEYSKKIGMRKTLVFYTGRAPRGHKTDWIMHEYRLDDQNSDQLQEEGWVVCRVFKKKNYSRTFLPESSQENSNNQKGSTFSGQLILETTKHNQIQAASQDYGFDTSLQLPQLFSPESVVAAPSFTSSISLNTTMGSIGYPQFCRSSQAERYGDWSFLDKLLASNSGVDQQSLSKAVPFHHVVDSTQNLLFQYLGAGSSCTEIDVLKFPR 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3690617 3698011 + BLOR13359 Blo04g00447 59475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00447 632 Gene3D NAC domain 325 484 IPR036093 GO:0003677|GO:0006355
Blo04g00447 632 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 78 259 IPR029063 -
Blo04g00447 632 MobiDBLite consensus disorder prediction 256 276 - -
Blo04g00447 632 Pfam No apical meristem (NAM) protein 381 458 IPR003441 GO:0003677|GO:0006355
Blo04g00447 632 PANTHER - 70 293 - -
Blo04g00447 632 MobiDBLite consensus disorder prediction 260 276 - -
Blo04g00447 632 Gene3D Vaccinia Virus protein VP39 93 324 IPR029063 -
Blo04g00447 632 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 70 293 - -
Blo04g00447 632 ProSiteProfiles NAC domain profile. 311 479 IPR003441 GO:0003677|GO:0006355
Blo04g00447 632 SUPERFAMILY NAC domain 382 479 IPR036093 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00447 Blo13g00613 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00447 Blo-Chr4:3690617 Blo04g00892 Blo-Chr4:10232082 3.54E-50 dispersed
Blo04g00724 Blo-Chr4:6671138 Blo04g00447 Blo-Chr4:3690617 7.45E-48 transposed
Blo13g00613 Blo-Chr13:28547654 Blo04g00447 Blo-Chr4:3690617 3.59E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12253 PF02365 NAM 2.00E-18 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00447 - - pxb:103958090 384.415