Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00450 ATGGCCAATCAACTCTACGCCTACAATCTCTCCTCATTCGGGACGGCACCTGCTTCTGCTCCTGATCCTGCCCCTGCTCCGTCGTCTCTGTCCACTATATATTCGTCCTCGCGTTCCCTCTCGGATATTGTTTCTACTCGCTACCTTATCTCTGAATCACTCGCTTCCAATCTCGCTAGCAAGTACTCCACTGTCACTGATCCAAGTGCTTCTATATATTTGAACCAGAGCGATGTCCTCAGGTTTGCTTCCTCCCAGAATGCCTCCCGAACTCCGCATTATGTCCCCCAATCTTCATGGCTTGTTGCTGACGTAGAGCCTTCACTCGACTCTGTTTCCGGAATGAAACGTTCTTCTGATGTGCTGTACGAGACTATTTTGGGTACCCGTGACACGGTTGGGCCAAGTCAAGCTTGGTATACTACAAATTCTTTAGCCAAGCGCACTAGATTTGAAAGTGCAAGCAATATTCCTTTATATCCACAGAGGCCAGGGGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTGGATTTGGAAATAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAAGGTGGAATTCCAGATTGGAAAGAGATAGGAATCGATTGGTTCTTATCAATTGGTATCAGAGCAGTCGTCATAAGGGCTTACAAAGAAAATATGGATAGAATTTCAAGGGTCATAGAGAATCATGCTTTCTTGAAGGAGCACATGGAGAAATTATTGGAGGAGTCGAGGAAAAGGGAATAG 762 46.06 MANQLYAYNLSSFGTAPASAPDPAPAPSSLSTIYSSSRSLSDIVSTRYLISESLASNLASKYSTVTDPSASIYLNQSDVLRFASSQNASRTPHYVPQSSWLVADVEPSLDSVSGMKRSSDVLYETILGTRDTVGPSQAWYTTNSLAKRTRFESASNIPLYPQRPGEKDCAHYMLTRTCGFGNSCKFDHPIWVPEGGIPDWKEIGIDWFLSIGIRAVVIRAYKENMDRISRVIENHAFLKEHMEKLLEESRKRE 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3710985 3715904 - BLOR13362 Blo04g00450 59478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00450 253 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 189 IPR000571 GO:0046872
Blo04g00450 253 Coils Coil 228 248 - -
Blo04g00450 253 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 74 202 - -
Blo04g00450 253 SUPERFAMILY CCCH zinc finger 165 190 IPR036855 GO:0046872
Blo04g00450 253 Gene3D - 133 202 - -
Blo04g00450 253 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Blo04g00450 253 PANTHER CCCH ZINC FINGER/TIS11-RELATED 74 202 IPR045877 GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00450 - - - csv:101212896 229.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00450 Blo13g00612 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00450 Blo-Chr4:3710985 Blo11g00410 Blo-Chr11:3563205 2.70E-07 dispersed
Blo04g00449 Blo-Chr4:3705378 Blo04g00450 Blo-Chr4:3710985 9.67E-06 tandem
Blo13g00612 Blo-Chr13:28536186 Blo04g00450 Blo-Chr4:3710985 3.27E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12255 PF00642 zf-CCCH 2.10E-07 CL0537 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00450 Blo_Chr04 FPKM 44.05777 47.969574 127.589996 132.459579 68.558441 74.385124 68.72068 69.199905 69.509842 69.223633