Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00454 ATGGGCTCCAAAGCGCGGAGGAAGTCGCAAATATGGTGCTCCCAGCCATTGACGCCTCTGATAGAAGGTCCTTATCCGGATATGCAAGATGAAGGCAGCAAGAAGGAGAGCTCATGGGAAGTAATTCGCGAATGGTTTCGAAGTCAGAAGACCAATTCCGGCTCCGCTGCTTTTTCCTCCCCCTCCTACGTCCCTCCGAAGATACAAGACCTGAGGCTTTTGCTCGGCGTCTTAGGCTGTCCTCTCGCCCCAATTCCTCTACTATCCCTGTCTGATCCGGATCCATCCGCCATTAACGGCCTCCGCATAAAGAACGCCCCACTCGAAAATTCTATCGCGCACTACATAATCCAACAATACTTGGCGGCAACGGGATGTTTAAAGCAACAAAAGAGTGCGAAGAACATGTACGCGTCGGGGAAGGTGAAGATGATGTGCTGCGAAACAGAGGTTTCTTCAGGTAAAAATGTGAAGAGCGTTGGAACCAGAAGTGAAGAAATAAACGGCTGCTTTGTGCTTTGGCAAATGGTTCCTGATATGTGGTCCCTAGAATTGGTCGTCGGAGGGAACAAGGTGGTCGCCGGCAGCGACGGCAAGACTGTCTGGCGCCACACGCCGTGGCTAGGCACACATCCAGCAAAAGGCCCACAAAGACCCTTGCGCCGTTTCATTCAGCTCAGCCGCGATGAAGATGAAACTACAATCCCAAGAACAGAAAATAATTGTTGTGATGGCCTGACACCTGACAATGATGAAGAATTGTCCCACGCTTTACCCTACATTACAAGTTCCTTCTCGGAATCTGGCTTAGATCCAAAGAGAACAGCCAGCCTTTTCGCCAAAGCACAGTGCCTAGGGGAGAAGCGGATAAGCGACGACGACTGCTTCGTACTGAAAGTATCGGCAGATCGAGCTGCCGTGATGGAAAGAAACGAGGGGCCGGCGGAGGTGATGAGGCACGTATTGTACGGATACTTTTGCCAAAAAAGTGGCCTCCTTATATACTTAGAGGACTCTCACTTGACTCGAGTTCAGTCGGCAGACAGTGATGAGGCCGTGTATTGGGAGACGACAATCGGAAGCAGCATTGGGGAGTACGAAGACGTTGATGGGTTGCTCATTGCCCACCAAGGCCGATCAATCGCCACCGTTTTCCGATTTGGCGAGACGTCAATGCAGCACAGTAGGACCAGGATGGAAGAAATTTGGACTGTTGACGAAGTGGTCTTCAACGTACCAGGACTTTCCGGCGACTACTTTACCGCTCCGGCTGACATTTTTTCACCGTGA 1290 51.16 MGSKARRKSQIWCSQPLTPLIEGPYPDMQDEGSKKESSWEVIREWFRSQKTNSGSAAFSSPSYVPPKIQDLRLLLGVLGCPLAPIPLLSLSDPDPSAINGLRIKNAPLENSIAHYIIQQYLAATGCLKQQKSAKNMYASGKVKMMCCETEVSSGKNVKSVGTRSEEINGCFVLWQMVPDMWSLELVVGGNKVVAGSDGKTVWRHTPWLGTHPAKGPQRPLRRFIQLSRDEDETTIPRTENNCCDGLTPDNDEELSHALPYITSSFSESGLDPKRTASLFAKAQCLGEKRISDDDCFVLKVSADRAAVMERNEGPAEVMRHVLYGYFCQKSGLLIYLEDSHLTRVQSADSDEAVYWETTIGSSIGEYEDVDGLLIAHQGRSIATVFRFGETSMQHSRTRMEEIWTVDEVVFNVPGLSGDYFTAPADIFSP 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3784415 3786099 + BLOR13366 Blo04g00454 59482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00454 429 PANTHER LIPASE 269 428 IPR006873 -
Blo04g00454 429 PANTHER PLANT/T8K14-16 PROTEIN 5 225 - -
Blo04g00454 429 PANTHER PLANT/T8K14-16 PROTEIN 269 428 - -
Blo04g00454 429 PANTHER LIPASE 5 225 IPR006873 -
Blo04g00454 429 Pfam Protein of unknown function (DUF620) 136 225 IPR006873 -
Blo04g00454 429 Pfam Protein of unknown function (DUF620) 269 423 IPR006873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00454 - - - pxb:103932289 561.222
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00454 Blo13g00606 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00454 Blo-Chr4:3784415 Blo18g00711 Blo-Chr18:17139514 6.82E-122 dispersed
Blo12g00981 Blo-Chr12:27842344 Blo04g00454 Blo-Chr4:3784415 2.20E-126 wgd
Blo13g00606 Blo-Chr13:28483740 Blo04g00454 Blo-Chr4:3784415 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1172 Blo04g00454 Blo13g00606 . . . . Bma08g00826 . . . . . . . . . . Bhi05g01979 . . Lac12g0029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe15g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007448 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 3 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00454 Blo_Chr04 FPKM 42.534782 33.057552 49.829605 48.776024 32.425945 38.990063 35.414845 62.039555 74.153244 79.585518