Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00455 ATGTGTGTCCAAGGCGACTCGGGACTAGTCCTCACCACCGACCCCAAGCCCCGCCTTCGGTGGACCGTCGAGCTCCATGCTCGTTTTGTCGACGCAGTCACCCAGCTTGGAGGCCCTGATAAAGCAACCCCAAAGACCATCATGAGGGTTATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAAAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAGCCTCATAAAGAATTCACCGATCACTCGATGAAGCATGCTTCTTCCTTAGAACTTCAACGAAACGCAGCATCTTCATCCAATGTTATTGGCCGCAACATGAACGATAACTCGCACATGGTGGATGCAATTAAGATGCAGATGGAGGTGCAGAGAAGACTGCATGAACAACTAGAGGTGCAAAGACACCTTCAACTGAGAATCGAAGCACAAGGGAAGTACATGCAAAATATACTAGAGAAGGCTTGTCAAACTCTTGTCGGTGAGAATATGGGCTGTGGAGGATCGTCCTTTAAGACAATGGTTCCATGTTTTCAAGACCTGAACATTTGTGGGGGAGACCAGCTTGATCTGGAGCAAAACATGGATAATTTTCTTCCGGTCAGTGACGATATTTGTCTCGAAAAGAAGGCAGGAAGCTCGTACAGCAATGGTGGAAAGAGCCCTCTTCTTTGGTCAGATGATCTTCAACTTCACATGTTAGGGCCGACGACGACTTCTTCCGGTGGTTTTAAAGGAGAGAGAGTCGTCGATCTAGACTCCATTTCCGACATCTACGACACAAAGCCATTACAAATTCCAGCGGATTCGATGGGAGATAAGAATTTCGACTCCACGGTGAGACTTGAACGACCATTCATTAGCCAAAAGAGTGCAAGTTTCAGGTGA 885 47.46 MCVQGDSGLVLTTDPKPRLRWTVELHARFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFTDHSMKHASSLELQRNAASSSNVIGRNMNDNSHMVDAIKMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQNILEKACQTLVGENMGCGGSSFKTMVPCFQDLNICGGDQLDLEQNMDNFLPVSDDICLEKKAGSSYSNGGKSPLLWSDDLQLHMLGPTTTSSGGFKGERVVDLDSISDIYDTKPLQIPADSMGDKNFDSTVRLERPFISQKSASFR 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3788347 3789796 - BLOR13367 Blo04g00455 59483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00455 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Blo04g00455 294 Pfam MYB-CC type transfactor, LHEQLE motif 112 157 IPR025756 -
Blo04g00455 294 Gene3D - 15 73 - -
Blo04g00455 294 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Blo04g00455 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Blo04g00455 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 233 IPR044848 GO:0003700
Blo04g00455 294 Pfam Myb-like DNA-binding domain 19 67 IPR001005 -
Blo04g00455 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00455 Blo15g00640 CCT
Blo04g00455 Blo13g00605 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00455 Blo-Chr4:3788347 Blo16g00685 Blo-Chr16:26475340 9.41E-71 dispersed
Blo15g00640 Blo-Chr15:17129641 Blo04g00455 Blo-Chr4:3788347 5.96E-67 transposed
Blo13g00605 Blo-Chr13:28469327 Blo04g00455 Blo-Chr4:3788347 9.13E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12256 PF00249 Myb_DNA-binding 7.30E-06 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00455 - - vri:117908572 390.963