Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00463 ATGAAACCATGTCCGAATTACCAGAATGGATGCAATGGGAGGAGATACGAGGCTCCTCCAGGACCTGAAAATGGAGGAGAAGAAAAAGGAAAGGGGTGCAAAGTGAACGTTATACAAAGAGGATTCTCCAAATTGGTAGATGGAGCCGTGATTAATGCCAGAGCCACCGACATATGGCAGACCAATACAAGCTTCCCATACGTATGCTTTTTCGTTCTCCGAAAAGTCGCAGAGAAGCAGCTTCTGAGCTCTCCATTAGCTAGGGTTGGTTGTTTGGGCGGCTTTCTTCGCTTACGTCTTCCACTTCTTCTTCTATCAGCTCGAAGAAGCTCTGTATCAATGGCTGCCTCTTCTTCGCTTCTCCGATCTGCTGTCAGTGTTCCTTTGTTTGAAGCCTCCTTTTCCGAGCTTTCTTCGTCGCGAAATCTTTCATTCACCAACCTTAGCACTTCAAAGCATCAATCGGGTATTTTCCGTGCAAGGGTATCAAGCGGCCCATCTTCCTTACAATTTTTTTTTTTGTTCAGAACAAGTAGGATCCGCAGTTTTGAACCGATTAAAGCCACGGCTACAGAAGCACCTCCTGCAGTTCAAAAATCACGGACTGGAGGAAAGACGAAGATTGGGATCAATGGTTTTGGTCGTATAGGAAGGTTGGTATTAAGAGTTGCTATTTCAAGAGATGATATTGATGTGGTGGCAGTTAATGATCCTTTCATTGACGCTAAATACATGGCTTACATGTTCAAATATGATTCTACACACGGAGGATTCAAAGGAACCATCAAGTTATTGGATGAATCCATTTTGGAAATTAATGGGAAGCAAATAAAAGTAATTAGCAAAAGGGACCCAGCTGAGGTTCCTTGGGATGGTTATGGGGCAGAGTTTGTTGTTGAATCATCTGGTGTTTTCACGACCATGGAGAAGGCTTCAGCACACTTGAAGGGTGGTGCCAAAAAAGTAGTCATATCAGCTCCATCTGCAGATGCTCCTATGTTTGTAGTTGGAGTTAATGAGAAGAGTTACAAACCAAACATGGATATTGTCTCAAATGCAAGCTGTACAACAAATTGTCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTTTGGAAGGTCTTATGACAACTGTTCATGCAACTACAGCAACTCAGAAGACTGTTGATGGACCTTCAATGAAGGATTGGCGAGGAGGCCGCGGAGCAGGCCAAAATATAATTCCTAGTTCAACAGGTGCTGCAAAGGCTGTAGGAAAAGTTCTCCCTGAGCTTAATGGAAAACTTACTGGAATGGCATTCCGCGTACCTACACCCAATGTATCTGTTGTGGACTTAACCTGTAGACTTCAGAAGAAGGCATCTTATGACGATGTCAAAGCTGCAATCAAGTATGCAGCTGAAGGTCCACTTAGAGGCATCCTCGGATTCACTGATGAAGATGTTGTTTCCAACGATTTTGTTGGTGATTCAAGGTCAAGTATATTTGATGCAAAGGCCGGAATAGGTCTCAGCTCCTCCTTCATGAAGCTCGTCGCATGGTACGACAACGAATGGGGTTACAGCAACCGAGTGCTGGACCTGATAGAGCACATGGCGATGGTGGCGGCTCACAACTAA 1626 44.46 MKPCPNYQNGCNGRRYEAPPGPENGGEEKGKGCKVNVIQRGFSKLVDGAVINARATDIWQTNTSFPYVCFFVLRKVAEKQLLSSPLARVGCLGGFLRLRLPLLLLSARRSSVSMAASSSLLRSAVSVPLFEASFSELSSSRNLSFTNLSTSKHQSGIFRARVSSGPSSLQFFFLFRTSRIRSFEPIKATATEAPPAVQKSRTGGKTKIGINGFGRIGRLVLRVAISRDDIDVVAVNDPFIDAKYMAYMFKYDSTHGGFKGTIKLLDESILEINGKQIKVISKRDPAEVPWDGYGAEFVVESSGVFTTMEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKSYKPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKKASYDDVKAAIKYAAEGPLRGILGFTDEDVVSNDFVGDSRSSIFDAKAGIGLSSSFMKLVAWYDNEWGYSNRVLDLIEHMAMVAAHN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3846877 3852750 - BLOR13375 Blo04g00463 59491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00463 541 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 353 360 IPR020830 GO:0016620
Blo04g00463 541 Gene3D Dihydrodipicolinate Reductase; domain 2 355 521 - -
Blo04g00463 541 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 473 488 IPR020831 GO:0016620
Blo04g00463 541 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 349 367 IPR020831 GO:0016620
Blo04g00463 541 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 314 327 IPR020831 GO:0016620
Blo04g00463 541 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 376 392 IPR020831 GO:0016620
Blo04g00463 541 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 433 450 IPR020831 GO:0016620
Blo04g00463 541 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 205 371 IPR036291 -
Blo04g00463 541 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 207 307 IPR020828 GO:0051287
Blo04g00463 541 SMART gp_dh_n_7 206 355 IPR020828 GO:0051287
Blo04g00463 541 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 354 517 - -
Blo04g00463 541 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 207 529 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Blo04g00463 541 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 116 540 IPR020831 GO:0016620
Blo04g00463 541 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 116 540 - -
Blo04g00463 541 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 360 517 IPR020829 GO:0016620
Blo04g00463 541 Gene3D - 207 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00463 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - pvy:116124435 676.781
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00463 Blo13g00601 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00463 Blo-Chr4:3846877 Blo04g01180 Blo-Chr4:21037178 6.52E-166 dispersed
Blo11g00641 Blo-Chr11:6636088 Blo04g00463 Blo-Chr4:3846877 5.84E-169 transposed
Blo13g00601 Blo-Chr13:28426206 Blo04g00463 Blo-Chr4:3846877 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00463 Blo_Chr04 FPKM 16.131483 16.151266 13.233642 12.729471 31.290146 33.445911 26.234171 11.688426 11.077271 10.63946