Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00465 ATGGCTACTAAGAGGAGCGTGGGCACTCTGACGGAGCCAGATTTGAAGGGGAAGAGAGTGTTTATGAGAGTGGATCTGAATGTCCCATTGGATGATAACTTCAATATCACTGACGACACCAGAATCCGCGCTGCTGTGCCTACTATTAAGTACTTGTTAGGTCATGGAGCTAGGGTCGTCCTTTCCAGCCACTTGGGACGCCCGAAAGGTGTGACACCCAAATATAGCTTGAAGCCTCTTGTGGCAAGACTGTCTGAACTCCTTGGCACTGAGGTTAAAATTGCCAACGATTGTATTGGAGCGGAAGTTGAGAAATTGGTCGCTGAATTACCTAATGGAGGTGTGTTGCTTCTTGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAACGACCCAGAGTTTGCAAAGAAGCTAGCTTCTCTTGGAGATATCTATGTGAATGATGCATTTGGCACTGCTCATAGAGCTCATGCTTCAACAGAGGGAGTGGCTAAATACTTAAAACCTTCTGTTGCTGGATTTCTTATGCAGAAGGAACTTGACTATCTTGTTGGAGCTGTTGCAAATCCCAAGAGACCGTTTGCTGCCATTGTTGGTGGGTCAAAGGTATCTTCGAAGATTGGCGTGATTGAGTCCTTACTGGAGAAGGTTGATGTTCTCTTGTTGGGAGGAGGAATGATCTTTACCTTCTACAAGGCACAAGGGTATTCAGTTGGGTCATCCCTTGTTGAGGAAGACAAGCTTGATCTTGCTACCTCCCTTATGGAGAAGGCCAAAAATAAGGGGGTCTCTTTGCTACTTCCAACCGATGTGGTCATTGCTGATAAATTTGCTCCTGATGCTAATAGCATGATCGTTCCGGCATCAGGTATCCCAGATGGTTGGATGGGATTGGATATTGGGCCTGATTCCATCAACACATTCAGCGAAGCTTTGGATTCGACAAAAACCATAATTTGGAATGGACCCATGGGCGTGTTTGAGTTTGATAAGTTTGCTGCTGGAACAGAGGGGTCATTTCTGCTGTTGCAGGCAATTGCCAGGAAGCTTGCCGACCTCAGTGGGAAGAACGTGACGACCATTATTGGAGGAGGAGACTCTGTGGCAGCAGTGGAAAAGGTTGGGCTCGCGGACAAGATGAGCCACATCTCCACCGGAGGTGGTGCCAGCTTAGAGCTTCTAGAAGGGAAGCCACTTCCGGGTGTCCTCGCTCTCGACGATGCTTGA 1227 47.68 MATKRSVGTLTEPDLKGKRVFMRVDLNVPLDDNFNITDDTRIRAAVPTIKYLLGHGARVVLSSHLGRPKGVTPKYSLKPLVARLSELLGTEVKIANDCIGAEVEKLVAELPNGGVLLLENVRFYKEEEKNDPEFAKKLASLGDIYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLMEKAKNKGVSLLLPTDVVIADKFAPDANSMIVPASGIPDGWMGLDIGPDSINTFSEALDSTKTIIWNGPMGVFEFDKFAAGTEGSFLLLQAIARKLADLSGKNVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3858254 3860684 - BLOR13377 Blo04g00465 59493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 195 214 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 141 163 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 383 400 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 360 371 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 113 128 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PRINTS Phosphoglycerate kinase family signature 172 194 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 Gene3D - 8 184 IPR015824 GO:0004618|GO:0006096
Blo04g00465 408 Hamap Phosphoglycerate kinase [pgk]. 9 407 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 CDD Phosphoglycerate_kinase 10 407 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 Gene3D - 187 407 IPR015824 GO:0004618|GO:0006096
Blo04g00465 408 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618|GO:0006096
Blo04g00465 408 PANTHER PHOSPHOGLYCERATE KINASE, CYTOSOLIC 1 408 - -
Blo04g00465 408 Pfam Phosphoglycerate kinase 12 397 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 SUPERFAMILY Phosphoglycerate kinase 9 407 IPR036043 GO:0004618|GO:0006096
Blo04g00465 408 PANTHER PHOSPHOGLYCERATE KINASE 1 408 IPR001576 GO:0004618|GO:0006096
Blo04g00465 408 PIRSF Pgk 3 408 IPR001576 GO:0004618|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00465 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - tcc:18594857 713.761
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00465 Blo15g00633 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01395 Blo-Chr7:34019098 Blo04g00465 Blo-Chr4:3858254 6.95E-43 transposed
Blo15g00633 Blo-Chr15:16594365 Blo04g00465 Blo-Chr4:3858254 0 transposed
Blo13g00599 Blo-Chr13:28414040 Blo04g00465 Blo-Chr4:3858254 2.29E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1132 Blo04g00465 . . . Bpe07g00471 . . . . . . . . . Sed04g3516 . . Bhi05g01998 Tan02g0042 Cmetu01g1031 Lac12g0043 Hepe02g0016 . . . . . . . . . . . . . . . . . Blo15g00633 . . . . . Bma03g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00859 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00465 Blo_Chr04 FPKM 8.539675 10.434239 12.741229 15.069151 11.254395 10.297693 11.516874 21.760193 20.869726 22.761387