Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00467 ATGGTGGCTTCTGGAACTCCTTCTGTTGCCGTCCCGTCTCCAAATCAGCCCCCAGCCCCTTTTTCCAACTCACCTCACCAGCTTGCATTCCAGCAGGCACAGCACTTCCATCAGCAGCAGCAGCAGCAACAACAGCACCAACTTCAAGTGTTTTGGGCCAACCAAATGCAAGAAATTGAGCAGACAACTGACTTCAAGAACCACAGTCTTCCACTCGCTAGGATAAAGAAAATAATGAAAGCCGATGAAGACGTTCGGATGATATCAGCCGAAGCCCCAGTGATATTTGCAAAGGCGTGTGAAATGTTCATTCTTGAGCTGACCTTGCGCTCTTGGATCCACACAGAAGAGAACAAGAGAAGAACTCTTCAGAAAAACGATATAGCAGCTGCCATTTCGAGGACAGATGTCTTTGATTTCTTGGTCGATATTATTCCGAGGGATGAGTTGAAGGAGGAGGGATTGGGAGTGACCAAAGGCGCTCTCCCGGTTGTTGGTTCCCCAGCCGATCTTCCTTATTACTATGTCCCACCACACCCAGTTGGACCTGCAGGTATGATCATGGGAAAGCCGGTAGTAGATCCAGCTGCAATGTACGGAGCTCAACAGCCTCGACCACCTATGGCTTTCATGCCATGGCCCCATAGCCAGCCTCAGCCAGATCAAAACGAAGCATAA 678 49.56 MVASGTPSVAVPSPNQPPAPFSNSPHQLAFQQAQHFHQQQQQQQQHQLQVFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGALPVVGSPADLPYYYVPPHPVGPAGMIMGKPVVDPAAMYGAQQPRPPMAFMPWPHSQPQPDQNEA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3880174 3880851 - BLOR13379 Blo04g00467 59495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00467 225 Pfam Core histone H2A/H2B/H3/H4 16 132 IPR007125 GO:0003677
Blo04g00467 225 MobiDBLite consensus disorder prediction 1 25 - -
Blo04g00467 225 SUPERFAMILY Histone-fold 35 141 IPR009072 GO:0046982
Blo04g00467 225 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 10 220 - -
Blo04g00467 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 10 220 - -
Blo04g00467 225 Gene3D Histone, subunit A 30 147 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00467 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - zju:107417913 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01104 Blo-Chr2:42020477 Blo04g00467 Blo-Chr4:3880174 2.12E-29 dispersed
Blo04g00467 Blo-Chr4:3880174 Blo04g01166 Blo-Chr4:20154829 1.32E-69 dispersed
Blo11g00489 Blo-Chr11:4507897 Blo04g00467 Blo-Chr4:3880174 5.28E-67 transposed
Blo13g00597 Blo-Chr13:28401234 Blo04g00467 Blo-Chr4:3880174 1.15E-117 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 82.2 1.7e-82 302.8
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.4 3.8e-71 265.0
Blo04g00467 . 48 199 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.3 2.0e-56 216.1
Blo13g00597 . 145 280 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.1 1.1e-49 193.7
Blo11g00489 . 516 673 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.8 2.7e-48 189.1
Blo11g00489 . 469 614 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.5 7.1e-54 207.6
Blo04g00467 . 25 222 CCAAT-HAP5 Transcription Factor Family AT1G08970 59.4 5.9e-48 188.0
Blo13g00597 . 89 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.7 2.2e-47 186.0
Blo16g00273 . 38 136 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.4e-41 166.0
Blo04g01166 . 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 9.1e-41 164.1
Blo11g00489 . 494 670 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.3 3.4e-58 221.9
Blo04g00467 . 47 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 1.4e-54 209.9
Blo13g00597 . 91 275 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 3.4e-50 195.3
Blo04g01166 . 35 199 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.1 2.2e-49 192.6
Blo16g00273 . 38 175 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 4.2e-48 188.3
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 75.3 1.4e-74 276.6
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.6 8.2e-64 240.7
Blo04g00467 . 48 204 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 4.2e-52 201.8
Blo13g00597 . 145 274 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.9 1.6e-46 183.3
Blo11g00489 . 516 620 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.9 2.5e-44 176.0
Blo04g00467 . 23 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.8 6.6e-64 240.7
Blo13g00597 . 110 273 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 6.8e-61 230.7
Blo11g00489 . 491 636 CCAAT-HAP5 Transcription Factor Family AT1G56170 65.8 1.3e-48 189.9
Blo04g01166 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.6 1.7e-48 189.5
Blo16g00273 . 38 161 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.9e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12257 PF00125 Histone 1.20E-18 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00467 Blo_Chr04 FPKM 28.783783 23.406822 29.076035 32.598568 36.492458 25.471319 30.655409 44.089302 54.934578 53.294434