Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00468 ATGCTCAGGCTAATATTCTCTTCTAGACAACTTTTGCTTTCTTCTCAGAAAAGCCCAGTGCGGGAGAGGTGGAATATTTTCACGTCCTTAAACTGTTCGACAATATGTCCCACAGAAGGAGAAAGCGTCGCTACTACTTCAGATTGTCTGAATGACTCCACAGATTTGTTGAGGAGATGGGGTTGCACCGATGGAGACGTAGCGAGGATATTTGCGCGAAGGCCATCTTTACGCAACGCTGATCTCAATCAACTTGAGCAAAAACTCAGTTTACTAAAAGACTTGGGAATTACTTCGCCTGATCTAGTTAAGATCATCCATTGTCGCCCCCGTTTCTTCAGCTGTCGAATCAATAATAACTTCGCCGAGCGGATTGATTTTTTCATGACATTGTTCGATTCAAAGCCTGTTCTTGTCAAAGCCATTGTGAGAAATCCGTCTCTATTGACTTACGATTTTCACCATAAAATCAAGCCTGTCATGGCTCTATATAAAGAAATGGGTGTAAGCAAAAAGGATTTGATACTTATGCTGATATCCCGGCCCACTTTGATTCCTCGAACTTCATTTGATGATGAGAAAGTGGAATACATTTGCAGAACCGGGGTTTCAAAGGATGCTACAATGTATAAATATGTTGTCACTATCATTGGCATCTCACGGCTCGAGACTATCCGTCGTAAAGTGGCAAATCTAGAGAAGTTCGGGTTTACAGAGGACGAGATTTTCTGTTTTTTTGGACGATCCCCTCTTATTCTAACTCTATCAGTGGATAAGGTTCAGAGGAATATGACATTCATTCTCTGCACATTGAAGATGCCTGCTAATGTAGTTATTCAGCACCCATTTTTGTTGTACTCCAATCTGGAAACTGTGTTGAAGCCTCGATTAAAACTCTCGATGAAGATGCAAGAAATGAATCTTAATTTGCAGATTAGGGGCCATGAAATGCTCAAAGCACTTAGGATGAAGGAGAAGAGGTTTTTAAAGGCGTTTGTGAGGAGTCAACCGAAAGAGGTTGCAGCGGAGCTGATAGAGTTCTATACCAGTGCAAAAGGAATCAAGAGGTCGTTGAATTTTAATCACTTGCAAGTGCGAGTGACTGGAAGGGGAGGTCTTCAATGGTGGAATGTTTCACAGGGTCTTAATTCAATGGCTGAAACTAGGTTTCAAGTTGGCGTGTTATCCTTGAAGTTGAATGCTGCTTCATTGAAGTTAAAACAGTGCATTAAGAGATCAATTCACTTGAGAGCTAAGCCAACATCTGTACCACATAAAATATCTGGTCTAGTTCCTCGTATCATGGCTTCCTCAGTTGCTGGCAAAATAGTTGAATCTTCTACACAATCCTTATATGCAAACGAACCAGTTGTGTCTGTGGATTGGCTTCATGCTAACCTTAAAGAGCCTGAATTAAAGGTATTAGATGCATCATGGTACATGCCAGATGAACAGAGAAATCCAATCCAAGAATACCAGGTTGCTCATATTCCTGGTGCCATTTTCTTTGATCTAGATGGGATAGCAGATCGAACCACAAAGTTGCCGCATATGTTGCCATCGGGGGAAGCTTTTGCTGCTGCTGTATCTGCTCTTGGCATCCAGAACAAGGATGGAGTAGTTGTTTACGATGGGAAGGGAATCTTTAGTGCGGCCCGCGTCTGGTGGATGTTCCGAGTATTTGGACACGAAAGAGTGTGGGTATTAGATGGTGGCCTACCAAGATGGCGTGCAGCTGGATATGATGTTGAATCCAGTGCTTCCAGTGATGCAATTCTGAAAGCTAGTGCCGCAAGTGAGGCAATAGAGAAAGTTTATCAAGGCCAGGCTGTTGGGCCAATCACATTTCAAACAAAATTTCAGCCACATCTTGTGTGGGGCATTGAACAGGTTAAAAGAAATATTGAGGAGAAATCTCATCTGCTCATAGATGCCAGATCAAAACCCAGATTTGATGGAGCTGTACCAGAGCCTAGGAAAGGTATAAGAAGCGGGCATGTTCCTGGCAGTAAGTGCGTTCCTTTTCCCCAGATGTTGGACGCCTCACAAACACTCTTGCCATCAGATGAGCTGAAGAAACGATTTGTTCAAGAAGGCATCTCTTTGGAAGCTCCTCTCATGACTTCTTGCGGCACTGGCGTTACAGCCTGCGTTCTTGCATTGGGTCTCCATAGAATTGGAAAATCTGAGGTTGCAGTTTATGATGGTTCTTGGACGGAATGGGGAGGGCAATCAGACACTCCGGTCGAAACTTCGCAATAG 2262 43.32 MLRLIFSSRQLLLSSQKSPVRERWNIFTSLNCSTICPTEGESVATTSDCLNDSTDLLRRWGCTDGDVARIFARRPSLRNADLNQLEQKLSLLKDLGITSPDLVKIIHCRPRFFSCRINNNFAERIDFFMTLFDSKPVLVKAIVRNPSLLTYDFHHKIKPVMALYKEMGVSKKDLILMLISRPTLIPRTSFDDEKVEYICRTGVSKDATMYKYVVTIIGISRLETIRRKVANLEKFGFTEDEIFCFFGRSPLILTLSVDKVQRNMTFILCTLKMPANVVIQHPFLLYSNLETVLKPRLKLSMKMQEMNLNLQIRGHEMLKALRMKEKRFLKAFVRSQPKEVAAELIEFYTSAKGIKRSLNFNHLQVRVTGRGGLQWWNVSQGLNSMAETRFQVGVLSLKLNAASLKLKQCIKRSIHLRAKPTSVPHKISGLVPRIMASSVAGKIVESSTQSLYANEPVVSVDWLHANLKEPELKVLDASWYMPDEQRNPIQEYQVAHIPGAIFFDLDGIADRTTKLPHMLPSGEAFAAAVSALGIQNKDGVVVYDGKGIFSAARVWWMFRVFGHERVWVLDGGLPRWRAAGYDVESSASSDAILKASAASEAIEKVYQGQAVGPITFQTKFQPHLVWGIEQVKRNIEEKSHLLIDARSKPRFDGAVPEPRKGIRSGHVPGSKCVPFPQMLDASQTLLPSDELKKRFVQEGISLEAPLMTSCGTGVTACVLALGLHRIGKSEVAVYDGSWTEWGGQSDTPVETSQ 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3884204 3889340 - BLOR13380 Blo04g00468 59496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00468 753 Coils Coil 628 648 - -
Blo04g00468 753 ProSitePatterns Rhodanese signature 1. 492 503 IPR001307 GO:0004792
Blo04g00468 753 ProSiteProfiles Rhodanese domain profile. 468 585 IPR001763 -
Blo04g00468 753 Gene3D - 450 592 IPR036873 -
Blo04g00468 753 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 629 752 IPR036873 -
Blo04g00468 753 SMART rhod_4 626 747 IPR001763 -
Blo04g00468 753 SMART rhod_4 458 582 IPR001763 -
Blo04g00468 753 CDD TST_Repeat_1 457 580 - -
Blo04g00468 753 ProSitePatterns Rhodanese C-terminal signature. 731 741 IPR001307 GO:0004792
Blo04g00468 753 ProSiteProfiles Rhodanese domain profile. 636 750 IPR001763 -
Blo04g00468 753 SMART mt_12 103 135 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 SMART mt_12 68 98 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 SMART mt_12 275 309 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 SMART mt_12 2 33 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 Gene3D Transcription termination factor 3, mitochondrial 114 342 IPR038538 -
Blo04g00468 753 CDD TST_Repeat_2 628 742 - -
Blo04g00468 753 PANTHER BNAC02G25610D PROTEIN 450 751 - -
Blo04g00468 753 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 454 587 IPR036873 -
Blo04g00468 753 Gene3D - 623 750 IPR036873 -
Blo04g00468 753 Pfam Rhodanese-like domain 459 578 IPR001763 -
Blo04g00468 753 Pfam Rhodanese-like domain 629 742 IPR001763 -
Blo04g00468 753 PANTHER THIOSULFATE SULFERTANSFERASE 450 751 IPR045078 GO:0016783
Blo04g00468 753 Pfam mTERF 55 130 IPR003690 GO:0003690|GO:0006355
Blo04g00468 753 Pfam mTERF 118 328 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00468 K01011 TST, MPST, sseA; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] - tcc:18594871 592.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00516 Blo-Chr2:8392191 Blo04g00468 Blo-Chr4:3884204 1.02E-08 dispersed
Blo04g00468 Blo-Chr4:3884204 Blo03g01470 Blo-Chr3:41334883 8.20E-11 dispersed
Blo04g00468 Blo-Chr4:3884204 Blo07g00180 Blo-Chr7:2262853 2.39E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1123 Blo04g00468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00468 . 447 753 Sulfurtransferasese/Rhodanese AT1G79230 77.9 3.8e-146 514.6
Blo04g00468 . 435 699 Sulfurtransferasese/Rhodanese AT1G16460 73.6 4.6e-113 404.4
Blo04g00810 . 34 307 Sulfurtransferasese/Rhodanese AT5G23060 61.2 1.6e-85 313.2
Blo16g00465 . 1 443 Sulfurtransferasese/Rhodanese AT4G01050 52.5 9.6e-120 427.6
Blo18g00643 . 9 613 Sulfurtransferasese/Rhodanese AT1G09280 63.2 2.1e-219 758.8
Blo13g00668 . 91 460 Sulfurtransferasese/Rhodanese AT2G40760 73.3 6.6e-155 544.3
Blo13g00095 . 87 432 Sulfurtransferasese/Rhodanese AT1G17850 65.4 1.9e-135 479.6
Blo12g00602 . 108 241 Sulfurtransferasese/Rhodanese AT2G42220 76.1 3.1e-57 218.8
Blo09g00271 . 40 221 Sulfurtransferasese/Rhodanese AT3G08920 61.0 1.4e-64 243.0
Blo15g00245 BCT 93 303 Sulfurtransferasese/Rhodanese AT4G24750 73.0 9.9e-93 337.0
Blo08g00130 . 401 616 Sulfurtransferasese/Rhodanese AT5G19370 65.1 2.6e-80 295.8
Blo10g00844 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 73.9 6.5e-155 543.9
Blo15g00078 . 28 190 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.2e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011657 2 1 1 1 0 0 2 0 0 1 0 1 2 1 1 2 0 2 2 0 0 1 1 0 1 0 1 1 3 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12258 PF02536 mTERF 5.50E-28 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00468 Blo_Chr04 FPKM 3.412585 4.021589 5.761992 5.590016 19.237131 23.192364 18.888653 3.734844 3.475379 3.664241