Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00474 ATGGCTCCAAGTTTTGAAAACGGTAACTCGCTTTTTGACTTCGTAGTCCGAGATGGAAACGGCGTCAAAGGAATGGTGGATTCCGGCTTATCCCAGGTACCAATCAGGTACATTCAACCGCCGCAAGAGCGTATCCAGAAGAATAACGCGGCCACCCTCGACCTGCCGCCAATCGATTTTTCGAAGCTTGATGGGCCTGACCACGATGCAGTGGCCGAGAGAATAGCCAGAGCCGCCGAGACTCTTGGGTTCCTCCAAGTTATTAACCATGGCGTGCCGGTCGAATTGCTCGAGTCTCTTAAAGAAGCAGCTCATGCCTTTTTTGGACAGCCATCGGAGAAGAAGGCTGTTTATCGCAAAGGTCATAGCCCTAGCCCCACCGTGAGCTACGGTACGAGCTTTGTGCCGGAGAAGGAAAAGGCGTTGGAGTGGAAGGACTATATCAGTATGGTGTATAAAAGCGACGAGGAGGCGCTTCAGTTTTGGCCGGAACAGTGCAGGGAAGTTGCTCTCGAGTACCTCAAATCATCGCTGAAAATGGTGAGAAAATTGTTAGAAGTTCTGTTGGAAAAGCTTGAAGTGACAGTAGCTGAGTCGAAAATAGATGCTCTGATTGGTATGAAGATGGTTAACATGAACTTCTACCCAACTTGTCCCAATCCGGAACTCACAGTCGGCGTCGGGCGGCACTCAGACATGGGGACCTTAACAGTGCTGTTGCAGGACGGAATTGGTGGATTGTATGTGAAAGTTGAGGAAGACGACGTCTTGATTGGTAAGAAGGGGGAGTGGGTGGAGATCCCGCCTATTCCTGGCGCTCTCGTCATTAACATCGGCGATACGTTACAGATATTGAGCAACGGGAAGTATAAAAGTGCTGAACACAGGGTTCGAACGACGAGCAAAAAGGCTCGAGTGTCGGTTCCGATCTTCACTATACCAAAAGGGGATGAGAAGATAGGGCCGTTGCCGGAGCTGGTCGAAAAAGACGGAGTGGCTCGATACAGAGAGTTTGTATTCGCGGAGTACATGAAGAACTTCTTTGCAAATGCCCATGATGGGAAGAAGTCTCTGGATTTCGCAGCCGCCTGA 1092 50.09 MAPSFENGNSLFDFVVRDGNGVKGMVDSGLSQVPIRYIQPPQERIQKNNAATLDLPPIDFSKLDGPDHDAVAERIARAAETLGFLQVINHGVPVELLESLKEAAHAFFGQPSEKKAVYRKGHSPSPTVSYGTSFVPEKEKALEWKDYISMVYKSDEEALQFWPEQCREVALEYLKSSLKMVRKLLEVLLEKLEVTVAESKIDALIGMKMVNMNFYPTCPNPELTVGVGRHSDMGTLTVLLQDGIGGLYVKVEEDDVLIGKKGEWVEIPPIPGALVINIGDTLQILSNGKYKSAEHRVRTTSKKARVSVPIFTIPKGDEKIGPLPELVEKDGVARYREFVFAEYMKNFFANAHDGKKSLDFAAA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3924975 3926363 + BLOR13386 Blo04g00474 59502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00474 363 Gene3D - 11 346 IPR027443 -
Blo04g00474 363 Pfam 2OG-Fe(II) oxygenase superfamily 209 312 IPR044861 -
Blo04g00474 363 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 164 IPR026992 -
Blo04g00474 363 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 2 355 - -
Blo04g00474 363 SUPERFAMILY Clavaminate synthase-like 21 355 - -
Blo04g00474 363 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 314 IPR005123 -
Blo04g00474 363 PANTHER FERULOYL COA ORTHO-HYDROXYLASE 2-LIKE 2 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00474 K23145 S8H; scopoletin 8-hydroxylase [EC:1.14.11.60] - pop:7480442 557.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00474 Blo-Chr4:3924975 Blo03g00789 Blo-Chr3:32915484 2.74E-59 dispersed
Blo04g00474 Blo-Chr4:3924975 Blo07g01376 Blo-Chr7:33877725 9.23E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1063 Blo04g00474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010310 2 0 1 2 3 0 0 0 0 1 0 0 0 0 2 0 0 6 0 0 1 3 0 0 0 3 1 0 2 3 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00474 Blo_Chr04 FPKM 5.079531 5.820899 1.494176 1.231986 20.428432 16.469431 20.280275 0.599742 0.315142 0.367067