Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00475 ATGGGTGGTGGCTGGTTTTCTCTTGTATTGGTGTTCACTTCAGTGCTCTTCCCTTGCTCTTCACTTGAGGTCGTTGGTGATGAGTCTCGGAAAGACTTGCACATTTTCTTAGGCGGCGGTACCGGTGGGAGTCCTCCTGAGGGTCGCCGTAAAGGGTCTCGTGTTCCTCCTCCTCCGCCCCCTCCACCAGCACCAGCTCCTCGTCGTGTACGCCCTCCACCTCCCCCACCACCATGTCCACCTCCACCGCTGTTGCCTTCACCGCCTCCCCTGCCGCCTCCTCCACCGCCTTCTCCTCCTCCACCGCCGCTGCCTTCTCCTCCTCCACCTCCTTCTCCTCCTCCACCACGGCCGCCTTCTCCTCCTCCACCGCGGCCGCCTTCTCCGCCTCCACCGCCTCCAATCAACAGAATAGAAGTGGCCTTCAATGTGATAAAAAATTTCAAACCCAAAATCACCTCTGATCCCTTGAACATCACGGGCTCATGGGTTGGCAACGATGTATGCTCGTACCAAGGATTTTCCTGCGACAAAGACCCCGTCTTCAACCAAACGACGGTTTCCGGCATAGACTTCAACAATTACCTGTTTGCTGGTCCTCAACTTACTCTCGATGGATTCTTGGATAAGTTTCCAGATCTGACATTCTTCCATGCAAACTCCAACAACTTCACTGGTCCAATCCCAGAAAACATTTCTCAACTGCCCTACTTTTACGAGCTAGATCTCAGCAACAACAAGTTTTCAGGTTCCTTTCCAAAGCCAGTTATAGGAGCTACAAATCTCACCTTCTTGGACCTCCGTTTCAACAACTACTCCGGTTCAGTTTCTCCCCAACTCTTCGGACTCGACCTCGACGTTATTTTCATCAACAACAACCAGTTTTCTGACGCGCTTCCTGACAATTTTGGCTCCACTCCGGCCAGATACCTCACTTTCGCCAACAACAAGTTCACCGGCCCTATTCCGGCGAGCATCGGAAAGGCCGGAGACACTCTCATTGAGGTTCTTTTTCTGAATAACGGTTTCAATGGGTGTCTGCCATATGAGATAGGCTTTCTGGGAAACGCTACGTTGTTCGACGCTAGCAAGAACAAATTAACTGGCCAAATTCCTGAATCCTTCGCCTGCTTGGAAAAAATGCAGCTTCTCAACTTTGCAAATAACCAGCTTTATGGCCAGGTCCCGGAGATTATATGTAAGCTCCCGGAGATCAAAAACTTAAGCCTGAACAGCAACTTCTTCACCGATGTTGGACCAGAGTGCCAAGAACTTATAACGAAAGATATTCTTGACCTTTCAAATAACTGCATTTCAGGCCTGCCGAACCAAAAATCAGGCGATGAGTGTAACCATTTCTCCTCTCAACGAAAAGCCTGTCCGAACTCGTCGTCATTCAGCGAAATCCCCTGCAAATCAATATGGTACTTGAACCCAAACAACCCAGGGCAAAAAAGGCCGCCTGCTCCGGCGCCTGCTCCTGCTGCAACAGTAAATCAAGCCTACACTTACAGTGCTCTCAAACGTAACTAG 1533 50.42 MGGGWFSLVLVFTSVLFPCSSLEVVGDESRKDLHIFLGGGTGGSPPEGRRKGSRVPPPPPPPPAPAPRRVRPPPPPPPCPPPPLLPSPPPLPPPPPPSPPPPPLPSPPPPPSPPPPRPPSPPPPRPPSPPPPPPINRIEVAFNVIKNFKPKITSDPLNITGSWVGNDVCSYQGFSCDKDPVFNQTTVSGIDFNNYLFAGPQLTLDGFLDKFPDLTFFHANSNNFTGPIPENISQLPYFYELDLSNNKFSGSFPKPVIGATNLTFLDLRFNNYSGSVSPQLFGLDLDVIFINNNQFSDALPDNFGSTPARYLTFANNKFTGPIPASIGKAGDTLIEVLFLNNGFNGCLPYEIGFLGNATLFDASKNKLTGQIPESFACLEKMQLLNFANNQLYGQVPEIICKLPEIKNLSLNSNFFTDVGPECQELITKDILDLSNNCISGLPNQKSGDECNHFSSQRKACPNSSSFSEIPCKSIWYLNPNNPGQKRPPAPAPAPAATVNQAYTYSALKRN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3926819 3928351 + BLOR13387 Blo04g00475 59503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00475 510 Gene3D Ribonuclease Inhibitor 143 307 IPR032675 -
Blo04g00475 510 PANTHER BNAC05G26270D PROTEIN 100 505 - -
Blo04g00475 510 MobiDBLite consensus disorder prediction 51 135 - -
Blo04g00475 510 MobiDBLite consensus disorder prediction 35 135 - -
Blo04g00475 510 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 100 505 - -
Blo04g00475 510 SUPERFAMILY L domain-like 151 440 - -
Blo04g00475 510 Gene3D Ribonuclease Inhibitor 309 479 IPR032675 -
Blo04g00475 510 PRINTS Proline rich extensin signature 95 116 - -
Blo04g00475 510 PRINTS Proline rich extensin signature 60 76 - -
Blo04g00475 510 PRINTS Proline rich extensin signature 81 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00475 - - - cmax:111471075 460.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00837 Blo-Chr2:30721586 Blo04g00475 Blo-Chr4:3926819 1.04E-148 dispersed
Blo04g00475 Blo-Chr4:3926819 Blo18g00704 Blo-Chr18:16011048 1.65E-121 dispersed
Blo04g00475 Blo-Chr4:3926819 Blo01g01542 Blo-Chr1:55024229 2.43E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00475 Blo_Chr04 FPKM 36.618893 38.261387 25.58555 26.609812 47.202942 48.726021 44.69595 29.820736 32.567024 32.043751