Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00478 ATGGCATCGATCTCTGTCCTCGGCGCTCACGCTTTCTCACAAACTTCTCTCACGGCTCCACAACGCCCTCCTCTTGCCCATAGTTCTCTTCCTCTGCCGCGGTGTTTTCGTTTTCACGATTGTTTTTCCGCTGCACCTAGGCGGTCGCCGGTTTTGGCTTCTGCCAATGTCGGCGTCACGGACTTTACGCCTGTCCGTTTCTCCTTTTTCTCATTAGTTTTGATTTTTTTTACTATCTTTCTGACAAGATCCTCAACGCATATTGTTGGCGATTTTATGACCAAAAAGGAGACATTGCTTGTTGTCAAAACCACAACAAGTGTTGATGACGCATTGCAGTTACTTGTCGAAAAGAGAATAACTGGATTTCCTGTGATAGATGATGACTGGAACCTGGTTGGTGTTATTTCAGATTATGATTTACTGGCACTTGACACCATATCAGGTAGTTGGGGTCACCATGATATAAGCATATTTCCCGATGTTGATAGTTCTTGGGAGAATTTTTTTGAGATACAAAAGCTTCTTAGCAAGGCCAATGGCGAAGTTGTGGGCGACTTGATGACACCTGCACCTCTTGTTGTTTGTGAAATGACCAAGTTGGAAGATGCTGCCAGGTTGTTGCTTGAGACCCAGCATCATCGGTTGCCGGTTGTTGATAATGATGGAAAGCTGGTTGGCGTTATCACCAGGGGAAACGTAGTTAGAGCTGCCCTCCAGATAAAACGCTCCATGGAGAAGTCGATATGA 750 45.47 MASISVLGAHAFSQTSLTAPQRPPLAHSSLPLPRCFRFHDCFSAAPRRSPVLASANVGVTDFTPVRFSFFSLVLIFFTIFLTRSSTHIVGDFMTKKETLLVVKTTTSVDDALQLLVEKRITGFPVIDDDWNLVGVISDYDLLALDTISGSWGHHDISIFPDVDSSWENFFEIQKLLSKANGEVVGDLMTPAPLVVCEMTKLEDAARLLLETQHHRLPVVDNDGKLVGVITRGNVVRAALQIKRSMEKSI 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3960653 3964335 - BLOR13390 Blo04g00478 59506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00478 249 ProSiteProfiles CBS domain profile. 188 244 IPR000644 -
Blo04g00478 249 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 86 246 - -
Blo04g00478 249 SMART cbs_1 191 239 IPR000644 -
Blo04g00478 249 SMART cbs_1 98 146 IPR000644 -
Blo04g00478 249 Pfam CBS domain 89 143 IPR000644 -
Blo04g00478 249 Pfam CBS domain 184 237 IPR000644 -
Blo04g00478 249 ProSiteProfiles CBS domain profile. 93 156 IPR000644 -
Blo04g00478 249 Gene3D - 84 245 IPR046342 -
Blo04g00478 249 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC-LIKE 86 246 - -
Blo04g00478 249 SUPERFAMILY CBS-domain pair 84 237 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00478 - - - qsu:111992141 248.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00825 Blo04g00478 CCT
Blo02g00825 Blo04g00478 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00478 Blo-Chr4:3960653 Blo04g01060 Blo-Chr4:15188524 1.91E-78 dispersed
Blo04g00478 Blo-Chr4:3960653 Blo02g00825 Blo-Chr2:29594451 1.03E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00478 Blo_Chr04 FPKM 0.945525 0.777449 0.0 0.395375 149.252533 127.28862 141.835724 0.277853 0.0 0.0