Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo04g00479 | ATGAAGGAGGCGGCCAAGACGAGCTTGGATCCTAGGCTGTGGCACGCATGTGGCGGCGGGATGGTTAAGATGCCACCAGTGAACTCCAAGGTTTTGTACTTCCCTCAAGGTCACACCGAGCATTCCCAAGCCACCGTCGATTTCGGTTCTGCCCCCAGAATTCCGCCGCTCATTGCTTGTAGAGTCGCCGGAGTGAAGTTCTTAACCGACCTTGAAAGTGACGAGGTTTTTGCCAAGGTGAAACTGGTTGTTCCTTTAGGAACGAACGAGCTTGATTCTGACGGAAATGGTGGTTATGGAATTAATGGGGCTGCTTCTTTTGCTAGATTGCTTGCCCCTGCCGAAGATGGAAAAAACAAACAACCTCCTATCCCGACAGAGTATGGTGCGATCGGTGGTCAGAACCAGTTTGTGACGACCTCTATGTATGTTGGAGATCTTGACCCGAATGTGACAGATTCGCAGCTCTACGACATATTTAATCAGGTCGGTCAGGTGGTCTCTGTTCGGGTCTGCAGGGATTTGTCTACTCGACGTTCGCTCGGTTATGGTTACGTCAATTATGGCAACCCGCAAGATGGTGCTAGGGCATTGGACGTTCTGAACTTTACACCTGTCAATGGAAAACCCATCCGAGTAATGTATTCTCATCGCGACCCCAGCATCCGAAAAAGTGGTGCTGGAAATATCTTTATTAAGAATTTAGACAAGGCGATCGACCACAAAGCATTACAGGAAACATTTTCTGCATTTGGGAATGTACTCTCCTGTAAGGTGGCCACAGACCAATCTGGCCAGTCAAAAGGTTATGGTTTTGTTCAATTTGATCGCGAGGAATCTGCTCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTTGGCCCTTTCCATCGCAAACAGGAAAGAGATAGTTCTGTTGAAAAATCAAAATTTAACAACGTGTATTTAAAAAATCTCTCTGAAGCAACCACTGAAGAAGATCTGCAAAATATTTTTGGTGAATTTGGTCTCATCACGAGTATAGCAGTGATGAAAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTAGGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAAATGAACTAAAAGCTCAATTTGAAAGTAGCTTGAAAGAAGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGATAGTATCAACGATGATAAGCTTAAGGAGTTGTTCTCCCCATTTGGCACAATCACCTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGCAAGGGATCTGGGTTTGTGGCATTCTCCTCTTCTGAAGAGGCTTCTAGAGCTATCTTGGAGATGAATGGGAAAATGGTCGGGAGCAAACCTCTGTATGTTGCACTTGCACAGAGGAAAGAAGAAAGAAAGCTTAGGCTGCAGGCACAATTTTCTCAGATGCAGCCTGTACCAATGCCGCCTTCTGTTGCTCCCCGGATGCCGATGTATCCAAATAATAGTCCTGGTCTTAGCCAACAAATATTCTATGGTGCGGCTCCTCCAGCTATAATTCCTTCCCAGGCTGGCTTTGGTTATCAGCAACAAATTGTTCCAGGCATGAGGCCTGGTGGGGCTCCGATGGCAAACTTTTTTGTGCCAATGGTTCAACAGGGACAGCAAGGACGCCCTGGTGGCAGACGAACTGGTGCTCTCCAGCAGACCCAGCAGCCTGTTCCACTAATGCAGCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGCCGCGCCCTGCCTGATGTGCCTATGCCTGGCATTGCTGGAGGCATGTTTTCGGTTCCATATGACATGGGTGGCATGCCACTGCGTGATGCAGCTCTCTCTCAGCCAATTCCAATTGTTGCTTTGGCTTCAGCTCTGGCAAATGCTAGTCCAGAACAGCAGAGAACAATGCTGGGTGAGAATCTTTATCCACTCGTGGAGCAGCTTGAGCTTGAAAATGCTGCTAAGGTGACTGGAATGCTTCTCGAAATGGATCAGACAGAAGTCTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCTAAGGTGGCTGAGGCTATGGAGGTTCTGAGAAATGTTGTTGCTCAGCAGCAGATTGGAAATGCAGCTGATCAGTTACTCTCATTCTCTCTCAATGACAACCTTGATTCCTGA | 2283 | 46.47 | MKEAAKTSLDPRLWHACGGGMVKMPPVNSKVLYFPQGHTEHSQATVDFGSAPRIPPLIACRVAGVKFLTDLESDEVFAKVKLVVPLGTNELDSDGNGGYGINGAASFARLLAPAEDGKNKQPPIPTEYGAIGGQNQFVTTSMYVGDLDPNVTDSQLYDIFNQVGQVVSVRVCRDLSTRRSLGYGYVNYGNPQDGARALDVLNFTPVNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVLSCKVATDQSGQSKGYGFVQFDREESAQKAIEKLNGMLLNDKQVFVGPFHRKQERDSSVEKSKFNNVYLKNLSEATTEEDLQNIFGEFGLITSIAVMKDEDGKSKCFGFVNFENPDDAARSVEALNGKKFDGKEWYVGKAQKKSERENELKAQFESSLKEAADKYQGANLYVKNLDDSINDDKLKELFSPFGTITSCKVMQDPNGISKGSGFVAFSSSEEASRAILEMNGKMVGSKPLYVALAQRKEERKLRLQAQFSQMQPVPMPPSVAPRMPMYPNNSPGLSQQIFYGAAPPAIIPSQAGFGYQQQIVPGMRPGGAPMANFFVPMVQQGQQGRPGGRRTGALQQTQQPVPLMQQQMVPRGRVYRYPPGRALPDVPMPGIAGGMFSVPYDMGGMPLRDAALSQPIPIVALASALANASPEQQRTMLGENLYPLVEQLELENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVVAQQQIGNAADQLLSFSLNDNLDS | 760 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3968617 | 3974127 | + | BLOR13391 | Blo04g00479 | 59507 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo04g00479 | 760 | Gene3D | - | 309 | 405 | IPR012677 | - | |
Blo04g00479 | 760 | Pfam | Poly-adenylate binding protein, unique domain | 669 | 733 | IPR002004 | GO:0003723 | |
Blo04g00479 | 760 | CDD | RRM3_I_PABPs | 318 | 397 | - | - | |
Blo04g00479 | 760 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 141 | 734 | IPR006515 | GO:0003723 | |
Blo04g00479 | 760 | CDD | RRM4_I_PABPs | 421 | 499 | - | - | |
Blo04g00479 | 760 | SMART | rrm1_1 | 141 | 214 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | SMART | rrm1_1 | 229 | 301 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | SMART | rrm1_1 | 320 | 392 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | SMART | rrm1_1 | 423 | 495 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | Gene3D | - | 133 | 229 | IPR012677 | - | |
Blo04g00479 | 760 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 319 | 396 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 129 | 743 | - | - | |
Blo04g00479 | 760 | Gene3D | - | 406 | 506 | IPR012677 | - | |
Blo04g00479 | 760 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 422 | 499 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | SUPERFAMILY | PABC (PABP) domain | 602 | 753 | IPR036053 | GO:0003723 | |
Blo04g00479 | 760 | SUPERFAMILY | RNA-binding domain, RBD | 140 | 309 | IPR035979 | GO:0003676 | |
Blo04g00479 | 760 | Gene3D | - | 657 | 739 | - | - | |
Blo04g00479 | 760 | SMART | rrm2_1 | 320 | 392 | IPR003954 | GO:0003676 | |
Blo04g00479 | 760 | SMART | rrm2_1 | 141 | 214 | IPR003954 | GO:0003676 | |
Blo04g00479 | 760 | SMART | rrm2_1 | 423 | 495 | IPR003954 | GO:0003676 | |
Blo04g00479 | 760 | SMART | rrm2_1 | 229 | 301 | IPR003954 | GO:0003676 | |
Blo04g00479 | 760 | Gene3D | - | 230 | 308 | IPR012677 | - | |
Blo04g00479 | 760 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 661 | 738 | IPR002004 | GO:0003723 | |
Blo04g00479 | 760 | PANTHER | RNA BINDING PROTEIN | 129 | 743 | - | - | |
Blo04g00479 | 760 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 228 | 305 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | SMART | poly_2 | 673 | 736 | IPR002004 | GO:0003723 | |
Blo04g00479 | 760 | CDD | RRM1_I_PABPs | 141 | 220 | - | - | |
Blo04g00479 | 760 | SUPERFAMILY | RNA-binding domain, RBD | 319 | 503 | IPR035979 | GO:0003676 | |
Blo04g00479 | 760 | CDD | RRM2_I_PABPs | 226 | 302 | IPR045305 | - | |
Blo04g00479 | 760 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 230 | 297 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 424 | 492 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 321 | 389 | IPR000504 | GO:0003723 | |
Blo04g00479 | 760 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 143 | 212 | IPR000504 | GO:0003723 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo04g00479 | Blo13g00582 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo04g00479 | Blo-Chr4:3968617 | Blo07g01371 | Blo-Chr7:33840541 | 4.78E-141 | dispersed | |
Blo11g00188 | Blo-Chr11:1492047 | Blo04g00479 | Blo-Chr4:3968617 | 1.61E-06 | dispersed | |
Blo01g01747 | Blo-Chr1:57155467 | Blo04g00479 | Blo-Chr4:3968617 | 0 | transposed | |
Blo13g00582 | Blo-Chr13:27941169 | Blo04g00479 | Blo-Chr4:3968617 | 0 | transposed | |
Blo17g00873 | Blo-Chr17:28792878 | Blo04g00479 | Blo-Chr4:3968617 | 0 | transposed | |
Blo18g00646 | Blo-Chr18:11570892 | Blo04g00479 | Blo-Chr4:3968617 | 0 | transposed | |
Blo13g00581 | Blo-Chr13:27928760 | Blo04g00479 | Blo-Chr4:3968617 | 3.71E-105 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo04g00479 | K13126 | - | jre:108988866 | 1055.43 |