Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00479 ATGAAGGAGGCGGCCAAGACGAGCTTGGATCCTAGGCTGTGGCACGCATGTGGCGGCGGGATGGTTAAGATGCCACCAGTGAACTCCAAGGTTTTGTACTTCCCTCAAGGTCACACCGAGCATTCCCAAGCCACCGTCGATTTCGGTTCTGCCCCCAGAATTCCGCCGCTCATTGCTTGTAGAGTCGCCGGAGTGAAGTTCTTAACCGACCTTGAAAGTGACGAGGTTTTTGCCAAGGTGAAACTGGTTGTTCCTTTAGGAACGAACGAGCTTGATTCTGACGGAAATGGTGGTTATGGAATTAATGGGGCTGCTTCTTTTGCTAGATTGCTTGCCCCTGCCGAAGATGGAAAAAACAAACAACCTCCTATCCCGACAGAGTATGGTGCGATCGGTGGTCAGAACCAGTTTGTGACGACCTCTATGTATGTTGGAGATCTTGACCCGAATGTGACAGATTCGCAGCTCTACGACATATTTAATCAGGTCGGTCAGGTGGTCTCTGTTCGGGTCTGCAGGGATTTGTCTACTCGACGTTCGCTCGGTTATGGTTACGTCAATTATGGCAACCCGCAAGATGGTGCTAGGGCATTGGACGTTCTGAACTTTACACCTGTCAATGGAAAACCCATCCGAGTAATGTATTCTCATCGCGACCCCAGCATCCGAAAAAGTGGTGCTGGAAATATCTTTATTAAGAATTTAGACAAGGCGATCGACCACAAAGCATTACAGGAAACATTTTCTGCATTTGGGAATGTACTCTCCTGTAAGGTGGCCACAGACCAATCTGGCCAGTCAAAAGGTTATGGTTTTGTTCAATTTGATCGCGAGGAATCTGCTCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTTGGCCCTTTCCATCGCAAACAGGAAAGAGATAGTTCTGTTGAAAAATCAAAATTTAACAACGTGTATTTAAAAAATCTCTCTGAAGCAACCACTGAAGAAGATCTGCAAAATATTTTTGGTGAATTTGGTCTCATCACGAGTATAGCAGTGATGAAAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTAGGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAAATGAACTAAAAGCTCAATTTGAAAGTAGCTTGAAAGAAGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGATAGTATCAACGATGATAAGCTTAAGGAGTTGTTCTCCCCATTTGGCACAATCACCTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGCAAGGGATCTGGGTTTGTGGCATTCTCCTCTTCTGAAGAGGCTTCTAGAGCTATCTTGGAGATGAATGGGAAAATGGTCGGGAGCAAACCTCTGTATGTTGCACTTGCACAGAGGAAAGAAGAAAGAAAGCTTAGGCTGCAGGCACAATTTTCTCAGATGCAGCCTGTACCAATGCCGCCTTCTGTTGCTCCCCGGATGCCGATGTATCCAAATAATAGTCCTGGTCTTAGCCAACAAATATTCTATGGTGCGGCTCCTCCAGCTATAATTCCTTCCCAGGCTGGCTTTGGTTATCAGCAACAAATTGTTCCAGGCATGAGGCCTGGTGGGGCTCCGATGGCAAACTTTTTTGTGCCAATGGTTCAACAGGGACAGCAAGGACGCCCTGGTGGCAGACGAACTGGTGCTCTCCAGCAGACCCAGCAGCCTGTTCCACTAATGCAGCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGCCGCGCCCTGCCTGATGTGCCTATGCCTGGCATTGCTGGAGGCATGTTTTCGGTTCCATATGACATGGGTGGCATGCCACTGCGTGATGCAGCTCTCTCTCAGCCAATTCCAATTGTTGCTTTGGCTTCAGCTCTGGCAAATGCTAGTCCAGAACAGCAGAGAACAATGCTGGGTGAGAATCTTTATCCACTCGTGGAGCAGCTTGAGCTTGAAAATGCTGCTAAGGTGACTGGAATGCTTCTCGAAATGGATCAGACAGAAGTCTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCTAAGGTGGCTGAGGCTATGGAGGTTCTGAGAAATGTTGTTGCTCAGCAGCAGATTGGAAATGCAGCTGATCAGTTACTCTCATTCTCTCTCAATGACAACCTTGATTCCTGA 2283 46.47 MKEAAKTSLDPRLWHACGGGMVKMPPVNSKVLYFPQGHTEHSQATVDFGSAPRIPPLIACRVAGVKFLTDLESDEVFAKVKLVVPLGTNELDSDGNGGYGINGAASFARLLAPAEDGKNKQPPIPTEYGAIGGQNQFVTTSMYVGDLDPNVTDSQLYDIFNQVGQVVSVRVCRDLSTRRSLGYGYVNYGNPQDGARALDVLNFTPVNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVLSCKVATDQSGQSKGYGFVQFDREESAQKAIEKLNGMLLNDKQVFVGPFHRKQERDSSVEKSKFNNVYLKNLSEATTEEDLQNIFGEFGLITSIAVMKDEDGKSKCFGFVNFENPDDAARSVEALNGKKFDGKEWYVGKAQKKSERENELKAQFESSLKEAADKYQGANLYVKNLDDSINDDKLKELFSPFGTITSCKVMQDPNGISKGSGFVAFSSSEEASRAILEMNGKMVGSKPLYVALAQRKEERKLRLQAQFSQMQPVPMPPSVAPRMPMYPNNSPGLSQQIFYGAAPPAIIPSQAGFGYQQQIVPGMRPGGAPMANFFVPMVQQGQQGRPGGRRTGALQQTQQPVPLMQQQMVPRGRVYRYPPGRALPDVPMPGIAGGMFSVPYDMGGMPLRDAALSQPIPIVALASALANASPEQQRTMLGENLYPLVEQLELENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVVAQQQIGNAADQLLSFSLNDNLDS 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3968617 3974127 + BLOR13391 Blo04g00479 59507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00479 760 Gene3D - 309 405 IPR012677 -
Blo04g00479 760 Pfam Poly-adenylate binding protein, unique domain 669 733 IPR002004 GO:0003723
Blo04g00479 760 CDD RRM3_I_PABPs 318 397 - -
Blo04g00479 760 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 141 734 IPR006515 GO:0003723
Blo04g00479 760 CDD RRM4_I_PABPs 421 499 - -
Blo04g00479 760 SMART rrm1_1 141 214 IPR000504 GO:0003723
Blo04g00479 760 SMART rrm1_1 229 301 IPR000504 GO:0003723
Blo04g00479 760 SMART rrm1_1 320 392 IPR000504 GO:0003723
Blo04g00479 760 SMART rrm1_1 423 495 IPR000504 GO:0003723
Blo04g00479 760 Gene3D - 133 229 IPR012677 -
Blo04g00479 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Blo04g00479 760 PANTHER POLYADENYLATE-BINDING PROTEIN 129 743 - -
Blo04g00479 760 Gene3D - 406 506 IPR012677 -
Blo04g00479 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 422 499 IPR000504 GO:0003723
Blo04g00479 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Blo04g00479 760 SUPERFAMILY PABC (PABP) domain 602 753 IPR036053 GO:0003723
Blo04g00479 760 SUPERFAMILY RNA-binding domain, RBD 140 309 IPR035979 GO:0003676
Blo04g00479 760 Gene3D - 657 739 - -
Blo04g00479 760 SMART rrm2_1 320 392 IPR003954 GO:0003676
Blo04g00479 760 SMART rrm2_1 141 214 IPR003954 GO:0003676
Blo04g00479 760 SMART rrm2_1 423 495 IPR003954 GO:0003676
Blo04g00479 760 SMART rrm2_1 229 301 IPR003954 GO:0003676
Blo04g00479 760 Gene3D - 230 308 IPR012677 -
Blo04g00479 760 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 661 738 IPR002004 GO:0003723
Blo04g00479 760 PANTHER RNA BINDING PROTEIN 129 743 - -
Blo04g00479 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 305 IPR000504 GO:0003723
Blo04g00479 760 SMART poly_2 673 736 IPR002004 GO:0003723
Blo04g00479 760 CDD RRM1_I_PABPs 141 220 - -
Blo04g00479 760 SUPERFAMILY RNA-binding domain, RBD 319 503 IPR035979 GO:0003676
Blo04g00479 760 CDD RRM2_I_PABPs 226 302 IPR045305 -
Blo04g00479 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 297 IPR000504 GO:0003723
Blo04g00479 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 492 IPR000504 GO:0003723
Blo04g00479 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Blo04g00479 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 212 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00479 Blo13g00582 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00479 Blo-Chr4:3968617 Blo07g01371 Blo-Chr7:33840541 4.78E-141 dispersed
Blo11g00188 Blo-Chr11:1492047 Blo04g00479 Blo-Chr4:3968617 1.61E-06 dispersed
Blo01g01747 Blo-Chr1:57155467 Blo04g00479 Blo-Chr4:3968617 0 transposed
Blo13g00582 Blo-Chr13:27941169 Blo04g00479 Blo-Chr4:3968617 0 transposed
Blo17g00873 Blo-Chr17:28792878 Blo04g00479 Blo-Chr4:3968617 0 transposed
Blo18g00646 Blo-Chr18:11570892 Blo04g00479 Blo-Chr4:3968617 0 transposed
Blo13g00581 Blo-Chr13:27928760 Blo04g00479 Blo-Chr4:3968617 3.71E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00479 K13126 - jre:108988866 1055.43