Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00480 ATGGAGCCAAATGAATGGAATTGGAGGAAAAAATCTTTGGAGAGGACGATATTGCCAACTAACAAAGTGATCACTCCTTCAAGGAGATTAGAAGAGATATGTGCTTCGATGAAGAATGGTGTGGTTCCTGAGATACCCGAGAAGAATCTGAGTGAGAAGTTATCGCCTGTCCTACTTGATTATGGTGTAAAACATGAGGAATTGACTAAACATGCCAGAACTGCACAAGAAACCATAACTGTCCGGGAGAAAGTAGAAGCAGAGTCGGGAATTCAGAAAAAGGAACTAGACGAGCCATTGAGAAAAGAAACAGCTTCAAACAAGAGGATAAACAATATGGATGCTTCAATAAACGATTCCGTCTTAGAAAAATTGAGAACATATGAGAAATCACAGGAAAATCTGGAGGATCTGTTGAGAGAGAGCAGCAGGCAGGTTGGGAACTTAGCTATTGAAAATTCTAATCTGAGTAAAGCTCTTTTAGTCAAGGACAAAATGATTGATGATCTTCAGAAGCTCAAGACACGGGTCGACGCTGAATTGAATGTCCTGATTAGTAGACTAGATTCAACTGAAAAAGAAAATTCTTTTGTAAAGTATGAGTTTCGGATGCTGGAGAAAGAACTGGAAGTTCGGCACGAAGAACTGGAATATAATCGTTTGTTTGTTGATGAGTTGCGCAAGCAACGCCTCGAGAATGAGAAGAAGATGACAATTTTGGAAGCAGAATGTCAGAGACTCCGCCTTCTCATGCAAAAACGGCTGCCAAGTTCTGCTGCTTTGTTCAACATGAAGACCGAAGTTGATTTGCTTGGAAGGGGTCGGGCTGAATCTAGAAGAACTAAGAAAAATCTGAACAGAGATCTGATTGTGAGGGATAACAATTCTGAAAATTTTGTTCAAATCCCTTCTAAACAGATTGATATAATCGTTGAGCAATTGCAGAGGATGGAAGAAGAAAACAAGTCTCTTACAGAAATAATCACAAATAAGACCTCTGAGCTCCATTCTTCGAGAATCATGCATTCTAGAACTGCTTCAAGGTTATCTCAGATGGAAAAGAAGCTTGAAGAGGTTTCTAACGACAAAAAAGCGATTGACCTTGCAATATGTTCTTCGACGAGCAAAGATGGATTGAGTTCTTCTCGGGATAATGCTCTAGTATCAGAATTCAAAAATTTAGGAAGTGAGAAACTCAACAATATTCCGGAAGCAAAAGCTTTAGACTTTTCAGACATGAGCTTGATGGATGATTTTGTTGAAATGGAGAGATTGGCATTAGTATCTGAGGAGACACCTTGCAGAAGCAGGCATGATCATGACGATAAAACAGGGAAAGAACTCGTTCCGGTTGAAAGTGTCGATTCCAGCTCTTGTGACATCAAAAGGGAAATTCACTCAAAAGAAATAGAAATTGGGAAACCATTTGACTGGCTTCAGGTGGTTTTGAATGCAATGTCAGAGCAAAAGCGTATTTCAAACCAAAGCATGGAAGATATTTTTCAGGACATTAAAATCGCCTTGGGTTATGTAAATCACTTAGACTTTCAGGATGTTGAAAAAACAGCAGATTCATTGACGGCAGCTTCCAATTTTGAAATCAGAGTCAGCCAAAATGTTCAATCCGAATCCAAAATACATAATTCAGTCTCGAAAATCATTGAACTGGTAGAAGGAATCTGTTCATCGAGCCATAACTATCAAGATAACTTGGCTGAAAGAAACCAAACATCATTAGGAGACTATTTTATCCATGTTTTCCGGTGGAACAAATCAGAACTGAATGCTACTTTAAGGGGTTTCATTCGGGTTTGTGATGATCTGTTGAATGGAAAAGCTGATTTTGAGAAATTTGCAGAGGCACTAGGATTTACTTTAGACTGGATTTTAGAAAACTACAAAACGCCTGGAGATACTTCGAGTTCAAGAGATAAGATTAATGAGCAACTCGGCTTGAAAAAAACATCCATTTCTGATGGCTTGAGCGCTGAAGCTAGATTTGAACCAGCGACGGATAAGGTCAAGTTACTAACTACGCAGCTCCAGGAGTCAAAAAAGAACATCAGAAATTTGCGGGCAGAAGTGGAGGCTTTGAAGGAGTCAAAGGGAATAACTGAAGAGCAGATTGAAAAGCAGAAGTTGATCAATGAAGATCTTGATACACAGCTTTCAGTAGCCAAAGCTAAACTGAACGAAGCTTGCCTGAAGTTTTCGTCTTTAGAAGTTGAATTGGAAGATAAGAGTATCTGCTGTGAAGAGTTGGAGGCTGCATGTCTTGAACTTCAGCTCCAGCTCCAGCTTGAAAGCATTGTGAAGAAGGAAACTCCAAGAAACAGCATAAATGAAGAGGGAAAGCACAGCCCAAATGGTTGGGAGATCACAGCAGCTTCCTCAAAGTTGGCCGAGTGTCAAGAAACCATCCTGAATCTTGGAAAACAACTGAAAGCACCGTCTTTGCCAAGGGAAGCAGCATTGCCGGAGAAGGCGTATTCTACCACAAACCCTTCTACCAATGCCACTAATCAGAAGAACCTGATCAAACGCTCTTCGCTCCGAGACCAGATGCTGGCTGAGGATGATGCTAAAATGGTGACTCTGAAGGCTAATCATTCCAATGCTTTGTCTCTTGTAACTGACATGAAATATCATGAGGTTGATCTCGGTTCAAGGAAGAAAGGCAGTGCAGCTAGGACAGTAGCTGTGGTATCAAGTAGAAGACAGGGAGGGGGGTTTAGTTTGCTGCAGAAATTACTCCTCAGAAGAAAGAAATCTAGCAGCAAGAGAAGTCGGTTGGTGGCGAAGACGTGA 2808 40.74 MEPNEWNWRKKSLERTILPTNKVITPSRRLEEICASMKNGVVPEIPEKNLSEKLSPVLLDYGVKHEELTKHARTAQETITVREKVEAESGIQKKELDEPLRKETASNKRINNMDASINDSVLEKLRTYEKSQENLEDLLRESSRQVGNLAIENSNLSKALLVKDKMIDDLQKLKTRVDAELNVLISRLDSTEKENSFVKYEFRMLEKELEVRHEELEYNRLFVDELRKQRLENEKKMTILEAECQRLRLLMQKRLPSSAALFNMKTEVDLLGRGRAESRRTKKNLNRDLIVRDNNSENFVQIPSKQIDIIVEQLQRMEEENKSLTEIITNKTSELHSSRIMHSRTASRLSQMEKKLEEVSNDKKAIDLAICSSTSKDGLSSSRDNALVSEFKNLGSEKLNNIPEAKALDFSDMSLMDDFVEMERLALVSEETPCRSRHDHDDKTGKELVPVESVDSSSCDIKREIHSKEIEIGKPFDWLQVVLNAMSEQKRISNQSMEDIFQDIKIALGYVNHLDFQDVEKTADSLTAASNFEIRVSQNVQSESKIHNSVSKIIELVEGICSSSHNYQDNLAERNQTSLGDYFIHVFRWNKSELNATLRGFIRVCDDLLNGKADFEKFAEALGFTLDWILENYKTPGDTSSSRDKINEQLGLKKTSISDGLSAEARFEPATDKVKLLTTQLQESKKNIRNLRAEVEALKESKGITEEQIEKQKLINEDLDTQLSVAKAKLNEACLKFSSLEVELEDKSICCEELEAACLELQLQLQLESIVKKETPRNSINEEGKHSPNGWEITAASSKLAECQETILNLGKQLKAPSLPREAALPEKAYSTTNPSTNATNQKNLIKRSSLRDQMLAEDDAKMVTLKANHSNALSLVTDMKYHEVDLGSRKKGSAARTVAVVSSRRQGGGFSLLQKLLLRRKKSSSKRSRLVAKT 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3983129 3986452 + BLOR13392 Blo04g00480 59508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00480 935 Coils Coil 342 369 - -
Blo04g00480 935 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 929 - -
Blo04g00480 935 Coils Coil 674 708 - -
Blo04g00480 935 Coils Coil 307 334 - -
Blo04g00480 935 Coils Coil 223 243 - -
Blo04g00480 935 Coils Coil 118 145 - -
Blo04g00480 935 PANTHER FILAMENT-LIKE PROTEIN (DUF869) 1 929 - -
Blo04g00480 935 Pfam Filament-like plant protein, long coiled-coil 663 824 IPR008587 -
Blo04g00480 935 Pfam Filament-like plant protein, long coiled-coil 67 659 IPR008587 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00480 - - - pmum:103335249 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00480 Blo-Chr4:3983129 Blo04g01055 Blo-Chr4:15074990 2.54E-08 dispersed
Blo04g00480 Blo-Chr4:3983129 Blo01g01590 Blo-Chr1:55767469 2.93E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1122 . . Lsi10g00525 . . . Blo04g00480 . . Bda14g00510 Bpe15g00902 . Bma03g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003264 2 4 2 1 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 3 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00480 Blo_Chr04 FPKM 19.216387 21.816725 61.64999 62.820698 51.006664 48.848976 54.989574 101.886147 102.675171 114.791725