Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00488 ATGTTCTCCTCCAACTCACCGCCCTTCACCCAAGCTCCGGCTGGGTCAAGCCGCCGAATGTCCCAAGAGCAGGAATTCTCAGTCATCGTGACGGCGCTGACTAACGTCGTGTCCGGCACTGTCTCCTCTGACGAATGCCTACCCCAGCTTGACCTCTTCCACTGCCCACCGGAATGCGGCGCTATTTCTGCACCCAGTTCGAGTACCGATGCCATAATGGCGACGGTTGATTCCGACACGTGTCCGATGTGTAAAATCAATGGGTGTCTAGGCTGCAAGTACTTTTTCCCGCCATCCAAAGGGGAAGAGAAAAAGGGGGCGAAGAAAAGGTTGAAGAAGAACTTCAGAGGGGTGAGGCAGCGCCCGTGGGGAAAATGGGCCGCCGAGATTAGAGACCCAAAGAGAGCGGCTCGGGTCTGGCTCGGCACATTCAAAACTGCTGAGGATGCTGCTCGAGCTTACGATAAAGCTGCCATTGAATTCCGTGGTCCTCGAGCTAAGCTCAATTTCCCCTTCCCGGATAGCTCGTTGAACCAGAATTACTCCGTTCCGGCTCCGGAGCCAGAATTCAACCAAAACCATGGAGAGGAGACTCGGACGAACACTCATTTCTCGTCGCAGATGGAAGGCAGTGGGAACGTGGAGAATGAAAGTGCATTATTACTGGAGACAATCGGAGAGGAAGACATACATGAATGGATGACGATGATGGATTTCGACACCAATTCCTCGAATTCTGCTAGTACTGGAAATACTCTGAGTTCTTAG 768 52.6 MFSSNSPPFTQAPAGSSRRMSQEQEFSVIVTALTNVVSGTVSSDECLPQLDLFHCPPECGAISAPSSSTDAIMATVDSDTCPMCKINGCLGCKYFFPPSKGEEKKGAKKRLKKNFRGVRQRPWGKWAAEIRDPKRAARVWLGTFKTAEDAARAYDKAAIEFRGPRAKLNFPFPDSSLNQNYSVPAPEPEFNQNHGEETRTNTHFSSQMEGSGNVENESALLLETIGEEDIHEWMTMMDFDTNSSNSASTGNTLSS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4042314 4043081 + BLOR13400 Blo04g00488 59516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00488 255 MobiDBLite consensus disorder prediction 1 20 - -
Blo04g00488 255 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Blo04g00488 255 CDD AP2 114 171 IPR001471 GO:0003700|GO:0006355
Blo04g00488 255 SUPERFAMILY DNA-binding domain 115 172 IPR016177 GO:0003677
Blo04g00488 255 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Blo04g00488 255 MobiDBLite consensus disorder prediction 185 214 - -
Blo04g00488 255 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Blo04g00488 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 16 248 - -
Blo04g00488 255 MobiDBLite consensus disorder prediction 195 214 - -
Blo04g00488 255 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 248 - -
Blo04g00488 255 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Blo04g00488 255 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Blo04g00488 255 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00488 - - - fve:101295986 216.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00488 Blo13g00573 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00209 Blo-Chr2:1961999 Blo04g00488 Blo-Chr4:4042314 1.19E-29 dispersed
Blo04g00488 Blo-Chr4:4042314 Blo07g00803 Blo-Chr7:25873598 5.21E-30 dispersed
Blo18g00150 Blo-Chr18:1375298 Blo04g00488 Blo-Chr4:4042314 8.31E-27 dispersed
Blo05g00618 Blo-Chr5:17767169 Blo04g00488 Blo-Chr4:4042314 4.69E-49 transposed
Blo13g00573 Blo-Chr13:27859579 Blo04g00488 Blo-Chr4:4042314 1.41E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12260 PF00847 AP2 4.90E-14 CL0081 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00488 Blo_Chr04 FPKM 24.324934 26.892382 21.731667 23.074635 29.504963 29.859428 30.74642 31.783916 31.848803 31.207981